Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7507 138 1e-27 seq513 95.1 1e-14 seq8767 89.7 4e-13 >seq7507 Length=243275 Score = 138 bits (152), Expect = 1e-27 Identities = 423/644 (66%), Gaps = 15/644 (2%) Strand=Plus/Plus Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||| ||||||| | || |||||| | ||||| | | ||||||| |||||| | ||| Sbjct 204008 TCGTTGGGACAGAAGAGAGACCACTCACCGTTATCTCTGACTCGCTCCATAAAGAGATCA 204067 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 |||||||| | || || |||| ||| | ||| | | || || |||| | | |||| Sbjct 204068 GGCACCCAAAGAGCATAAAACAAATCGCGGGCTCTAATTTCGTCCTTACCAA--AGTTTT 204125 Query 131729 ttC--AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTG 131786 | | | || | || || || || |||||||||||||||| ||||| || | | Sbjct 204126 TGCGGAGATCCAGGAACATGAATATATCAGCATGCCAGGGTTCCAGATACATGGCGAAAG 204185 Query 131787 CGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCA 131843 |||| ||| ||||| ||||||| |||| || || ||||||| | || |||| Sbjct 204186 CGCCAGGACGCTTATTACCACCTTGATCGACATAGCGGGCCGTGTTGTTAAACACACGCA 204245 Query 131844 ACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903 ||||||| | || || | || || ||||| | |||||| ||| | || | Sbjct 204246 GCATGGGCAAGAGGCCATTAGAGTAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCAC 204305 Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962 || ||||||| || | || || || || ||||| ||| || ||| | || || | Sbjct 204306 GGACATTGTGAATATTCAAGCCGATGCCACCAGCCGTCTTT-GAAATTTGAGCACAGATC 204364 Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGC-GGCAATGTCGACTAAAAAGCAAGA 132021 | || || | ||||||||||| | |||| | || ||| || || || ||||| Sbjct 204365 TTGAGGGTTTCGTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAAC-AAGAAACAAGA 204423 Query 132022 GGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAG 132081 ||||| ||| || || ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 204424 GGACAGTTGTGGGCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATGTGTGAAATA 204483 Query 132082 TTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC--GCCCAGATGTATG 132139 | | ||| |||| || ||| || | |||||||| | || ||| || Sbjct 204484 ACGCTCTGACATTAGGTTGTACGTTTCTATGGCAGCGTCGATATCTTGGCC--ATGGATA 204541 Query 132140 GTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTG 132199 | ||||| |||||| || || ||| | |||||| |||| |||||||||| Sbjct 204542 CCAACAGCGACACGCATGATCAAATGCTGAGGTCTCTCGGCTACTTTGGAGTCGATTTTG 204601 Query 132200 ATCAAATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 | ||| || | ||||| || ||||| ||||| | ||||| Sbjct 204602 AGCAAGTACGAGCGCTCCAATGTCTTGAAGCCAAAGAAATTGTA 204645 >seq513 Length=239887 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| || ||||| | | || | ||||| Sbjct 208282 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCT 208223 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || |||||| |||| ||||| ||||| || || || | ||| || || || | Sbjct 208222 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGG 208163 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | || | || || |||| ||||||||||| || || | ||| Sbjct 208162 ATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTG 208103 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || || |||||||||||| Sbjct 208102 CCAGTAAGAGTCTTAACGAAGATTTGCATA 208073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || ||||| || || || | || | ||||||||| | ||||| || || || |||||| Sbjct 208537 AACTATTGACCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTG 208478 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| | | || | ||||| | || || |||||| |||| ||||| ||||| Sbjct 208477 TAGTCTGAAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGG 208418 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | || || || || |||||| | || | | || | | || || Sbjct 208417 TCTGGGGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTA 208358 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||||| || |||| |||||| || |||||||| || || || |||||| Sbjct 208357 GATTCAACTTCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCATA 208301 >seq8767 Length=28599 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||||| ||||||| || ||| || | | |||||||||| || | ||| Sbjct 17180 TTAACAATTTGAAATTCACCAGACAAGACACGGCGCATGTAAATGTTGGAAGTATAGGGT 17121 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 |||||| | || ||| |||| || || | |||| ||| |||||||| ||||| Sbjct 17120 TCAAAGCACTCATTGAAACCGAGAATCTGCGAGGTAGATGCAGTGGGCATAGGTGCCAAG 17061 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 | ||||||||||||| || | | | | || | ||||| |||||| |||||| Sbjct 17060 AGAAGAGAATTACGAACGCCATACTTGGCAATGTCAGCCTTCAGGGTATCCCAGTCCCAT 17001 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCA 130966 | | ||||| ||||| |||||||| ||| Sbjct 17000 AAATCAGTAGGAGTGACA---TTCCACATGTCA 16971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424853417728344