Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7507 192 7e-44 seq802 147 3e-30 seq11881 141 1e-28 seq7890 96.9 4e-15 >seq7507 Length=243275 Score = 192 bits (212), Expect = 7e-44 Identities = 885/1384 (64%), Gaps = 34/1384 (2%) Strand=Plus/Minus Query 104232 TGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACAT 104291 || ||||||| || || | ||||| ||||| |||| || || ||| | | || || | Sbjct 204563 TGATCATGCGTGTCGCTGTTGGTATCCATGGCCAAGATATCGACGCTGCCATAGAAACGT 204504 Query 104292 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 104351 || || ||||| | || |||| || || | || ||| | ||||||||||| | Sbjct 204503 ACAACCTAATGTCAGAGCGTTATTTCACACATGCCAGTCCCACCTTGTTCAATGCTGGCA 204444 Query 104352 CACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 104411 | || | || ||| ||||| ||| ||| | | ||| || |||||||| ||| | | Sbjct 204443 CTCCTCGCCCACAACTGTCCTCTTGTTTCTTGTTGACCATGAAAGAGGACTCGATCGAAG 204384 Query 104412 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 104471 ||||||| | ||| || | | ||||| ||||| |||||| |||||| || || || Sbjct 204383 GTATCTACGAAACCCTCAAGATCTGTGCTCAAATTTCAAAGACGGCTGGTGGCATCGGCT 204324 Query 104472 TGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAG 104531 || | || || |||| | || | | ||| ||| || || || || | || Sbjct 204323 TGAATATTCACAATGTCCGTGCTACTGGTTCTTACATTGCTGGTACCAACGGCTACTCTA 204264 Query 104532 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTG 104591 |||| | | || ||||| || || |||||| ||| || |||||||| |||||| || Sbjct 204263 ATGGCCTCTTGCCCATGCTGCGTGTGTTTAACAACACGGCCCGCTATGTCGATCAAGGTG 204204 Query 104592 G------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 104645 | ||||| || || |||| | ||||| || || ||||| || ||||| Sbjct 204203 GTAATAAGCGTC---CTGGCGCTTTCGCCATGTATCTGGAACCCTGGCATGCTGATATAT 204147 Query 104646 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCT 104705 | |||||| || | || ||| ||| | || || | ||||||| | | Sbjct 204146 TCATGTTCCTGGATCTCCGCAAAAACTTTGGTAAGGACGAAATTAGAGCCCGCGATTTGT 204087 Query 104706 TCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGT 104765 | | ||||| ||| | || |||||||| ||| || |||| || | || | |||| Sbjct 204086 TTTATGCTCTTTGGGTGCCTGATCTCTTTATGGAGCGAGTCAGAGATAACGGTGAGTGGT 204027 Query 104766 CTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAG 104825 ||||||| ||||| || |||| ||||| || | || | ||| || || || ||| Sbjct 204026 CTCTCTTCTGTCCCAACGAGGCTCCTGGCCTATGTGAAGTGTGGGGCGATGA-ATTCAAG 203968 Query 104826 CCCTT-TACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 104884 |||| | | |||| ||| ||||| | || | | || | | || | | Sbjct 203967 ACCTTGTTTGAACAGTATGAGCGTGAAGGCAGAGCTAGAGAAACCAT-CAAGGCACAAAA 203909 Query 104885 G-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAA 104943 | | ||| | || || | || ||||||| || || |||| || | |||||| || || Sbjct 203908 GCTTTGGTATGCCATCTTGGAGGCTCAAACTGAAACCGGTAATCCTTTCATGCTCTATAA 203849 Query 104944 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCT 105003 || || || || |||||| || ||| ||||| ||||| |||||| || || || Sbjct 203848 GGATGCTTGCAATAGAAAGAGCAACCAACAGAATCTGGGTACTATCAAGTGTAGTAACCT 203789 Query 105004 CTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 105062 ||||| |||||| | |||| || ||| | || || || || ||||| || || | Sbjct 203788 TTGTACTGAAATCGTTGAATATTCCAG-CCCTGACGAAGTAGCCGTCTGTAATCTGGCCT 203730 Query 105063 CAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCC 105122 | || || | ||| | ||| | || || | | ||| || |||| |||| || | Sbjct 203729 CCATTGCCTTACCCTCTTTTGTTG-TC--GATAGAGAGAGATACGATTTCCAAAAGCTTC 203673 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 | || || || || ||||||| || | |||| |||| ||| || | ||| | Sbjct 203672 ATGATGTCACTAAGGTCATCACCAAGAATTTGAACAAGATTATCGATGTCAACTATTATC 203613 Query 105183 C---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTC 105239 | ||||| | | || || || | |||||| ||||| |||||| | ||||||| Sbjct 203612 CTGTGGTTGAAGCAGAGCG---CTCCAACAAGAGACATCGTCCTATTGGTTTGGGTGTTC 203556 Query 105240 AGGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCCGACGAAGCGAAG 105298 | || | || |||| || || || || | || || || || || || ||| Sbjct 203555 AAGGCTTGGCTGATGCTTTTATGCTGATGAAG-TTTGCTTTCGACTCGCCTGAGGCCAAG 203497 Query 105299 GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAG 105358 | | ||| | || || || || || || || || || || || || | || Sbjct 203496 CAGCTGAATATTCAGATTTTCGAAACAATCTACCATGCTGCCCTGGAAGCTTCTAATGAA 203437 Query 105359 TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTG 105418 | || || ||| || ||||| || | ||| ||| ||| | ||| ||||| | Sbjct 203436 CTCGCTCAGCAATTTGGCCCGTATGAGACATATGAAGGTAGTCCTGTTTCCCAAGGCATT 203377 Query 105419 CTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC--TACGACTGGGAAGCTCTCA 105476 || |||| || |||| |||| || | ||| | |||| | | || |||| | | | | Sbjct 203376 CTGCAATACGACATGT-GGAATGTCACACCTA-CTTCTCTTTGGGATTGGGCATCCTTGA 203319 Query 105477 AGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAAC 105534 | ||| || ||| | | || | |||||| ||| | | ||||| ||||| || Sbjct 203318 AAGAAAAGATTGCAA--ATCACGGCGTCCGTAACTCCCTCTTGCTTGCTCCTATGCCTAC 203261 Query 105535 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACAT 105594 ||||| ||| | |||||| |||| || ||||||||||| |||||||| | ||| | Sbjct 203260 TGCCTCAACCTCTCAAATCATGGGCTTCAACGAATGCTTTGAGCCCTACACATCAAACTT 203201 Query 105595 CTAT 105598 ||| Sbjct 203200 GTAT 203197 >seq802 Length=2293163 Score = 147 bits (162), Expect = 3e-30 Identities = 197/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 104943 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATC 105002 |||| ||||| || ||||| |||||||||||| |||| ||| ||||| | Sbjct 2026118 AAGATGCCTGCAATGAAAAGTCAAATCAAAAGAATCTGGGCACCATCTCCTCATCCAACC 2026059 Query 105003 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 105062 | |||||||| ||| | |||| |||| || ||| |||||| ||||| || || | Sbjct 2026058 TGTGTACAGAGATCATTGAATATACATCTCCTGACGAGGTGGCTGTTTGTAATCTGGCTT 2025999 Query 105063 CAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCC 105122 | | ||||| ||||||| ||| ||| |||| || ||||| ||||| | ||| ||||| | Sbjct 2025998 CGCTTGCTCTGCCCAAGTTTGTTGATGCAGAAACCAAGACGTTTGACTTTGAGAAACTTC 2025939 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 | |||||| | || |||||| |||||| | |||| ||| |||||| |||| |||| Sbjct 2025938 ATGAAGTTGCCAAGGTTGTCACGAAAAACTTGAACAAAGTCATTGATGTCAATTACTACC 2025879 Query 105183 CCGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216 | || ||| || || | | |||||||||||| Sbjct 2025878 CTGTAGAGGAAGCACGCACAAGTAATATGAGACA 2025845 >seq11881 Length=132943 Score = 141 bits (156), Expect = 1e-28 Identities = 260/371 (70%), Gaps = 15/371 (4%) Strand=Plus/Minus Query 94579 AACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCCTTCTATGCGTATC---AGTG 94634 |||||| |||||| || | || | ||||||| | || ||||||| || || | | Sbjct 45210 AACTTTTGTGATGAAGTCAAGATTC-CTGAAGCCAAATGTTTCTATG-GTTTCCAAATCG 45153 Query 94635 TCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGA 94694 ||| ||||| | |||| |||||||||||| | || |||| ||||| ||||| Sbjct 45152 CCAT--TGAAAACATTCATGCTGAGACATACAGTCTTTTGATTGACACTTATATCAAGGA 45095 Query 94695 TGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAA 94754 | | ||||| ||| || ||||||||| ||||| |||| | || ||||| ||| |||| Sbjct 45094 TAGCGCTGAAAAGGAGATGCTCTTTGACGCCATTGAAACCATCCCCTGTAT-CAAGAGAA 45036 Query 94755 AG-CGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTC 94812 || | || ||||| | || ||| | | ||| | ||| |||||||| || | Sbjct 45035 AGGCTGACTGGGCCTTCAAATGGATCTCTGGCAATGA----TTCTTTTGCTGAAAGATTA 44980 Query 94813 TTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGG 94872 | || ||||| || || |||||||||||||| || || || | | |||| ||| Sbjct 44979 GTTGCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGG 44920 Query 94873 CTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGAC 94932 ||||||||||| || |||||||| || | ||| || || || | |||||||||||| Sbjct 44919 CTCAAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGAC 44860 Query 94933 GAGGGACTCCA 94943 ||||| || || Sbjct 44859 GAGGGCCTTCA 44849 >seq7890 Length=113537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/371 (67%), Gaps = 9/371 (2%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| ||||||||||| | ||||| ||| | || |||| |||||| || | Sbjct 82117 CGATCAAAACGACCTGGACGCATCAGCGCAGGATCCAAGACATCAGGGCGATTGGTACCA 82058 Query 9584 GCGATGACAACAATA-CCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || | ||| |||| | ||| | | ||||| |||||||| || || | |||||| Sbjct 82057 GCCAAGACGACAACATGCTGACT-AGAGTCAAAGCCATCCATTTCCACCAGCAATTGGTT 81999 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGC--GTTG-CTTTCC 9699 | || ||||| ||||||||| | ||| ||| | ||| ||| ||| || Sbjct 81998 CAGGGTGCTTTCCCTTTCATCATTGCCGCCCATTTGTCCACCCTTGCCTCTTGCCTTACC 81939 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAA 9758 | ||||| |||||||| | |||| ||| || || ||| ||| | || ||| Sbjct 81938 AATAGCATCGATCTCATCGACAAAGATGATACAGGGAGCATTCTTCTTG-GCTGTGGCAA 81880 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | | ||| || ||||| | ||||||||||||||||| |||||||| | | | | | Sbjct 81879 ACAAATCACGCACACGGGAAGGACCCACACCAACAAACATTTCCACAAACTCGGAGCCAG 81820 Query 9819 A-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||||| || |||||| || |||| ||| | ||||||||| Sbjct 81819 AGACGCT-CAAAAAGGGGACGCCAGCTTCACCGGCGGTGGCCTTGGCCAACAGAGTCTTA 81761 Query 9878 CCCGTACCTGG 9888 || ||||| || Sbjct 81760 CCAGTACCGGG 81750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583146794385880