Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq802 181 1e-40 seq13444 125 8e-24 seq11881 104 3e-17 >seq802 Length=2293163 Score = 181 bits (200), Expect = 1e-40 Identities = 355/521 (68%), Gaps = 4/521 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||||||| | | ||||| || || | |||||||| |||| || ||| | | | | Sbjct 2026966 CCTCAGTACATGATTATGCGTGTGGCTCTGGGCATCCACGGCGCTGATCTCGAGAGCGCC 2026907 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||| ||||| || ||| | |||| || ||||| || ||||| || || ||| Sbjct 2026906 TTTAAGACCTACGATCTCATGTCCTCCAAGTATTTTACGCATGCCACGCCCACTCTGTTC 2026847 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||| || ||| ||| || || |||||||||| ||||| || ||| |||||| Sbjct 2026846 AACGCTGGCACGCCCAAACCTCAACTGTCGAGCTGCTTCCTTGTCCAAATGCGCGATGAC 2026787 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || ||||||||||||||||| ||||| | | || || | || |||||| | || Sbjct 2026786 AGTATTGAGGGCATCTACGATACGCTGACGACCTGTGCACGTATATCCAAGGCCGCGGGC 2026727 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCG-GTCGAGTGGTAC-ACGAATCAATGGGACGA 19400 ||| |||| | || || ||||| | | | | | || || ||| |||| Sbjct 2026726 GGTGTCGGCGTTGCCTTTCAAAAGATCCGTGGCTCAGGCTCCTAC--ATTGCTGGCACGA 2026669 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 | || || |||||||||| || ||||| ||||| |||||| ||||||| | | | Sbjct 2026668 ATGGCACCTCCAACGGTATCGTTCCTATGCTGCGCGTGTTCAACGACACGGCGCGTTTTG 2026609 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 ||| ||||| ||||| ||||| || || || ||||| ||||| ||||| ||||| | Sbjct 2026608 TCACGCAGGGCGGCGGAAAACGTAATGGTAACTTTGCCATGTACCTGGAGCCTTGGCATG 2026549 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 ||| ||| | || || | ||| || | |||| | |||| ||||||||||| || Sbjct 2026548 TGGATGTCTTTGACTTTTTGGAATTGAGAAAGAACAATGGTGCTGAGGAGATGCGTGCTC 2026489 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621 | || | || || ||||||| | || || || || ||| Sbjct 2026488 GTGATTTATTTTTGGGCTTGTGGGTGCCAGATCTGTTTATG 2026448 Score = 168 bits (186), Expect = 7e-37 Identities = 325/476 (68%), Gaps = 4/476 (1%) Strand=Plus/Plus Query 79428 ACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTG 79487 |||||||||||| | || | |||| | || || | |||||| | || || | || Sbjct 2026493 ACGCATCTCCTCAGCACCATTGTTCTTTCTCAATTCCAAAAAGTCAAAGACATCCACATG 2026552 Query 79488 CCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTA 79547 ||| |||||||| || ||||| || ||| || || || ||||||||||| |||| | Sbjct 2026553 CCAAGGCTCCAGGTACATGGCAAAGTTACCATTACGTTTTCCGCCGCCCTGCGTGACAAA 2026612 Query 79548 CCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT 79607 || ||||||| |||||| || || ||||| || ||||| |||| || | ||| ||||| Sbjct 2026613 ACGCGCCGTGTCGTTGAACACGCGCAGCATAGGAACGATACCGTTGGAGGTGCCATTCGT 2026672 Query 79608 CCCGTTGATTCGT-GTACCGCTCGCC-CGAATGTTCGAGCAGTGGATTCCGATGCCCCCG 79665 || || || | | | ||| || || || || | |||| || || Sbjct 2026673 GCCAGCAAT--GTAGGAGCCTGAGCCACGGATCTTTTGAAAGGCAACGCCGACACCGCCC 2026730 Query 79666 GACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCG 79725 | |||||| || | || || | | ||||| |||||||||||||| || ||| Sbjct 2026731 GCGGCCTTGGATATACGTGCACAGGTCGTCAGCGTATCGTAGATGCCCTCAATACTGTCA 2026790 Query 79726 TCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAG 79785 || ||| ||| |||||||||||||||| || || ||| ||| || |||||||| Sbjct 2026791 TCGCGCATTTGGACAAGGAAGCAGCTCGACAGTTGAGGTTTGGGCGTGCCAGCGTTGAAC 2026850 Query 79786 AGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACG 79845 || || ||||| || ||||| || |||| | ||| |||||||| |||| | || Sbjct 2026851 AGAGTGGGCGTGGCATGCGTAAAATACTTGGAGGACATGAGATCGTAGGTCTTAAAGGCG 2026910 Query 79846 CGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | | ||| || ||||||||||||| | || || ||||| | | |||||| || Sbjct 2026911 CTCTCGAGATCAGCGCCGTGGATGCCCAGAGCCACACGCATAATCATGTACTGAGG 2026966 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 |||| ||| || ||||| ||| | ||| | ||||||||||||||| || ||| | | Sbjct 2025227 TACAAGACGGTCTGGGAGATCTCTCAGCGCACCATCATCGACATGGCTGCTGATAGAGCT 2025168 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCA-TGGAGAATCCGAGCCTGGCGAA 20748 || | || |||||||| ||||| | || | ||| || ||| || | || || Sbjct 2025167 GCGTTTATTGACCAGTCGCAGTCTATGAACTTGTTCTCTGCTGAACCCAACTACGGT-AA 2025109 Query 20749 GCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCT 20808 ||| | ||||||||| | |||| |||| | ||||| | |||||||||||||| ||||| Sbjct 2025108 GCTCACGTCCATGCATTTCTACGCCTGGAAAAAGGGATTGAAGACGGGCATGTATTATCT 2025049 Query 20809 GCG 20811 || Sbjct 2025048 TCG 2025046 >seq13444 Length=200645 Score = 125 bits (138), Expect = 8e-24 Identities = 291/436 (67%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG-AGGTCGCGGCAACGCATCTCCT 79438 || ||| |||| |||||||||||| || || |||| |||| ||| ||| | | || Sbjct 117588 CTTCATAAAGATGTCCGGGATCCAGAGT-CCAAGAAGGAGGTGGCGAGCACGGAGATTCT 117530 Query 79439 CGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCA 79498 | |||||| ||| ||| |||| ||| || | ||||||||||||||| ||||| | Sbjct 117529 CTTCGCCCGAGTTTTTTGACAGGTCGATAAACTCAAAGATGTCGGCGTGCCATGGCTCGA 117470 Query 79499 GATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGT 79558 |||||| || ||| ||||||| ||| |||| || ||| | | || || | | Sbjct 117469 GATAGACAGCATACGTACCCTTGACCTTTTTAGCGCCGGGGGTGATGAAGCGAGCAGCAT 117410 Query 79559 TGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTC 79618 ||| || || || |||||||| | ||| |||| | | ||||||||| ||| || Sbjct 117409 CGTTAAACACACGCAGCATGGGGATGATACCGTTCGAGGTGCCGTTCGTGCCGGCAATGT 117350 Query 79619 GTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGA 79678 | || || || || ||| | || || |||| | || || |||||||| Sbjct 117349 AGGAGCCAGAGGCACGGATCTTCTGGAAGCTCATGCCGACGGTGCCTGAAGCCTTGGAGA 117290 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGA 79738 || | ||||| || || || ||||| || ||||| || |||||||| | Sbjct 117289 TGCGGGCGCAGGTTGCGACAGTGTCATAGATACCTTCGATACTATCCTCCTTCATCTGCA 117230 Query 79739 CCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 || ||||| |||| || | ||| |||| ||||| ||||| |||| ||||| | | Sbjct 117229 CCTGGAAGAAGCTAGAGAGCTGGCCGTTGGCAGTACCTGCGTTCAAGATGGTCGTCCCGG 117170 Query 79799 CGTGCGTGAAGAACTT 79814 ||| || |||| ||| Sbjct 117169 CGTAGGTAAAGAGCTT 117154 >seq11881 Length=132943 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| ||| ||||| ||||||||||| ||||| || | |||||||||||| Sbjct 44976 GCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGGCTC 44917 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| ||||||||||| || ||| || || || || |||| || || |||||| Sbjct 44916 AAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGACGAG 44857 Query 60111 GGCCTCCATCAGGAGTTTGC 60130 ||||| ||| || ||||| Sbjct 44856 GGCCTTCATACCGACTTTGC 44837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548417583971280