Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq802 165 9e-36 seq7507 140 4e-28 seq11881 84.2 2e-11 seq8767 82.4 8e-11 >seq802 Length=2293163 Score = 165 bits (182), Expect = 9e-36 Identities = 354/524 (68%), Gaps = 4/524 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||||| | | ||||| || || |||| |||||||| | || | | | | | Sbjct 2026966 CCTCAGTACATGATTATGCGTGTGGCTCTGGGCATCCACGGCGCTGATCTCGAGAGCGCC 2026907 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 | |||| ||||| | ||| | ||||| |||||||| |||||||| || |||||| Sbjct 2026906 TTTAAGACCTACGATCTCATGTCCTCCAAGTATTTTACGCATGCCACGCCCACTCTGTTC 2026847 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 |||||||| ||| | ||||| |||||||||||||||| || ||| |||||| Sbjct 2026846 AACGCTGGCACGCCCAAACCTCAACTGTCGAGCTGCTTCCTTGTCCAAATGCGCGATGAC 2026787 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || ||||||||||| ||||| | | ||||| | || |||||| |||| Sbjct 2026786 AGTATTGAGGGCATCTACGATACGCTGACGACCTGTGCACGTATATCCAAGGCCGCGGGC 2026727 Query 53420 GGTATCGGTATCCACTGCTCGAACG-TCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 ||| |||| | || || || | |||||| ||| | || || ||||| Sbjct 2026726 GGTGTCGGCGTTGCCT-TTCAAAAGATCCGTGGCTCAGGCTCCTACATTGCTGGCACGAA 2026668 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 ||| | || | || ||||| |||||||| ||||| |||||| ||||||| || | || Sbjct 2026667 TGGCACCTCCAACGGTATCGTTCCTATGCTGCGCGTGTTCAACGACACGGCGCGTTTTGT 2026608 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 || ||||| || || || || || || || ||||| ||||| ||||| ||||| | Sbjct 2026607 CACGCAGGGCGGCGGAAAACGTAATGGTAACTTTGCCATGTACCTGGAGCCTTGGCATGT 2026548 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-C 53657 || | | || ||| | || || | ||| | |||| || |||||||| ||| | Sbjct 2026547 GGATGTCTTTGACTTTTTGGAATTGAGAAAGAACAATGGTGCTGAGGAGATGCG-TGCTC 2026489 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAA 53701 |||| | ||| | ||||| | || || || || |||||| Sbjct 2026488 GTGATTTATTTTTGGGCTTGTGGGTGCCAGATCTGTTTATGCAA 2026445 >seq7507 Length=243275 Score = 140 bits (154), Expect = 4e-28 Identities = 294/433 (68%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-AC 53232 |||| |||||| || | ||||||| ||||| | |||||||| || | || | || Sbjct 204579 GAGAGACCTCAGCATTTGATCATGCGTGTCGCTGTTGGTATCCATGGCCAAGATATCGAC 204520 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || | || |||||| || ||||| | || || || || |||| || || Sbjct 204519 GC-TGCCATAGAAACGTACAACCTAATGTCAGAGCGTTATTTCACACATGCCAGTCCCAC 204461 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 | ||||||| ||||| || || ||| || |||| || ||| || || | ||||| Sbjct 204460 CTTGTTCAATGCTGGCACTCCTCGCCCACAACTGTCCTCTTGTTTCTTGTTGACCATGAA 204401 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 || ||||||||||| || |||||||| || |||||| ||||| || || || ||| Sbjct 204400 AGAGGACTCGATCGAAGGTATCTACGAAACCCTCAAGATCTGTGCTCAAATTTCAAAGAC 204341 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGG 53471 | | ||||| ||||| | | | || || |||||||| | || | || | Sbjct 204340 GGCTGGTGGCATCGG-CTTGAATATTCACAATGTCCGTGCTACTGGTTCTTACATTGCTG 204282 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| | | |||| || |||| ||||| || || || ||||||||||||| Sbjct 204281 GTACCAACGGCTACTCTAATGGCCTCTTGCCCATGCTGCGTGTGTTTAACAACACGGCCC 204222 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | || ||| | || |||||| ||||| || | |||||||| || || || || | Sbjct 204221 GCTATGTCGATCAAGGTGGTAATAAGCGTCCTGGCGCTTTCGCCATGTATCTGGAACCCT 204162 Query 53592 GGCACGCCGACAT 53604 |||| || || || Sbjct 204161 GGCATGCTGATAT 204149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 || |||| ||| ||||||||||||||| | ||||| ||| || ||||||||||| Sbjct 203000 TGGTTGATATGGCTGCTGATCGTGGTGCTTTTATCGATCAGAGTCAAAGTCTGAACATCT 202941 Query 55833 TCAT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAA 55890 | || ||||| ||| | | ||| || | || | ||||||||||| || ||| | || Sbjct 202940 TTATTGGAGAG-CCTAATTTTGGCAAATTAA-CTAGTATGCACTTTTATGGTTGGCAAAA 202883 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927 ||| | ||||| |||||||| ||||| || || ||| Sbjct 202882 GGGTTTGAAGACTGGTATGTATTATCTTCGCACTCGC 202846 >seq11881 Length=132943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/274 (67%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||||||||| ||||| | | |||||||| || || |||||||| | ||| || ||| Sbjct 44870 ATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAAATG 44929 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | || || || ||||||||| |||||||| ||||| || || | | || Sbjct 44930 GAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAAGCAACTAATCTTTCA 44989 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCG 74961 || || | ||| | || ||||| | ||| ||||| ||||| |||| |||| Sbjct 44990 GCAAAAGAATCATTGCCAGAGATCCA--TTTGAAGGCCCAGTCAGCCTTTCTCTTGATAC 45047 Query 74962 CAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCT 75021 |||| || || || || | ||||| | |||| || || |||||||| Sbjct 45048 AGGGGATGGTTTCAATGGCGTCAAAGAGCATCTCCTTTTCAGCGCTATCCTTGATATAAG 45107 Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||||||| ||| ||| ||||| | |||||| Sbjct 45108 TGTCAATCAAAAGACTGTATGTCTCAGCATGAAT 45141 >seq8767 Length=28599 Score = 82.4 bits (90), Expect = 8e-11 Identities = 221/338 (65%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 |||||||| |||| || || | || || || || || |||||||| || |||||| Sbjct 15853 CAAAAGTATTTTATCCATGCTAGTCCTACTCTTTTTAATGCTGGTACTCCTCGTCCTCAG 15912 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || || | ||||| || ||| | || || |||| ||||| Sbjct 15913 CTATCGTCTTGTTTTCTATTGACTCCCAAGGAAGATTCGGTTGAAGGTATCTTTGAGACT 15972 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 |||||| ||| || | ||||| ||| | | |||||||| ||| | || | ||| Sbjct 15973 CTCAAGCGTTGTTCCAAGATCTCAAAGAGCGCTGGTGGTATTGGTTTAAACGTCCATAAC 16032 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 ||||||| | | || || ||| | || || | || |||| | | || Sbjct 16033 ATCCGTGCTACTGATTCATACATTGCCGGGTCTAATGGTGAAGCTCATGGTTTATTACCC 16092 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 |||||| ||||| |||| || || || ||||| | || ||||| ||||| Sbjct 16093 ATGCTCAAGGTCTTTAACAGTACTGCTCGCTACGTGGATCAAGGTGGCAATAAGCGTCCT 16152 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 || | || || || ||||||||||| ||||| ||||| Sbjct 16153 GGCGCCTTTGCTATTTACCTCGAGCCTTGGCATGCCGA 16190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547109039792600