Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq513 167 3e-36 seq7507 165 9e-36 seq15377 140 4e-28 seq2679 113 5e-20 seq2291 109 6e-19 seq11881 100 3e-16 seq6568 100 3e-16 seq802 82.4 9e-11 >seq513 Length=239887 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| |||||||| ||||| | || ||||| || | Sbjct 208074 ATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCATTACATTAGAAGTTGAATCCACT 208133 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| || || || |||||||| || ||||| |||||||| Sbjct 208134 GATACGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAGACCAA 208193 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || || |||||| | || |||| |||||| || ||||||||| Sbjct 208194 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTTAGACTATAAC 208253 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||| | || | ||||| || ||||| Sbjct 208254 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTCCGTGGTGG 208300 >seq7507 Length=243275 Score = 165 bits (182), Expect = 9e-36 Identities = 693/1070 (65%), Gaps = 32/1070 (3%) Strand=Plus/Plus Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 ||||| ||| || | ||||||| ||| ||||| || | | || || || || | ||| Sbjct 203527 CATCAGCATAAAAGCATCAGCCAAGCCTTGAACACCCAAACCAATAGGACGATGTCTCTT 203586 Query 80769 GTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 ||| || ||||| || || | || ||| |||| |||||| | ||||| || Sbjct 203587 GTTGGAGCGCTCTGCTTCAACCACAGGATAATAGTTGACATCGATAATCTTGTTCAAATT 203646 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC-- 80886 || | ||| || ||||||||||| || || || ||| || | | | || Sbjct 203647 CTTGGTGATGACCTTAGTGACATCATGAAGCTTTTGGAAATCGTATCTCT-CTCTATCGA 203705 Query 80887 --ACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 ||||| | || ||||| | ||| |||||||| || ||||| || || |||| || Sbjct 203706 CAACAAAAGAGGGTAAGGCA-ATGGAGGCCAGATTACAGACGGCTACTTCGTCAGGG-CT 203763 Query 80944 GTAA-ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | || | || |||||||| || || | ||| | |||| || |||||||| || | || Sbjct 203764 GGAATATTCAACGATTTCAGTACAAAGGTTACTACACTTGATAGTACCCAGATTCTGTTG 203823 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||||| ||||| ||| |||| | || ||||||| || || Sbjct 203824 GTTGCTCTTTCTATTGCAAGCATCCTTATAGAGCATGAAAGGATTACCGGTTTCAGTTTG 203883 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | || | |||||| | ||||| || | ||||||| | | | ||||||| Sbjct 203884 AGCCTCCAAGATGGCATACCAAAGCTTTTGTGCCTTGATGGTTTCTCTAGCTCTGCCTTC 203943 Query 81123 GGCCACATACTTGGCGTAAGCTTCGTC--GAACTTGGCACCGTGAAGTTCAGTGAGGTCT 81180 | |||||| | || | ||| ||| | | || | |||| ||| | Sbjct 203944 ACGCTCATACTGTTC--AAACAAGGTCTTGAATTCATCGCCCCACACTTCACATAGGCCA 204001 Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT-ACAGCCTTCATGAA 81239 || |||||| || || | || ||| || || | |||| || || ||| || Sbjct 204002 GGAGCCTCGTTGGGACAGAAGAGAGACCACTCACCGTTAT-CTCTGACTCGCTCCAT-AA 204059 Query 81240 AGCG-TCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 || | ||||| | ||| || || |||| |||||| | || || | ||| Sbjct 204060 AGAGATCAGGCACCCAAAGAGCATAAAACAAATCGCGGGCTCTAATTTCGTCCTTACCAA 204119 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGA---TGTCCGCATGCCATGGCTCCAGATACA 81355 ||| ||| | || || || ||||| | || |||||||| || |||||||||| Sbjct 204120 AGTTTTTGCGGAGATCCAGGAA---CATGAATATATCAGCATGCCAGGGTTCCAGATACA 204176 Query 81356 CGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 ||||| | || || | ||||| || | ||| || ||||| || ||||| Sbjct 204177 TGGCGAAAGCGCCAGGACGCTTATTACCACCTTGATCGACATAGCGGGCCGTGTTGTTAA 204236 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||||| ||| || | || |||| || | ||||| ||||| | || || | Sbjct 204237 ACACACGCAGCATGGGCAAGAGGCCATTAGAGTAGCCGTTGGTACCAGCAATGTAAGAAC 204296 Query 81473 CCTTGGCGCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 | | || || || ||| || | ||| ||||||||||| | | ||||||||| ||| Sbjct 204297 CAGTAGCACGGACATTGTGAATATTCAAG-CCGATGCCACCAGCCGTCTTTGAAATTTGA 204355 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAA 81590 ||||| || | ||| || || || || ||||| || | |||||| ||||| ||| Sbjct 204356 GCACAGATCTTGAGGGTTTCGTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAA-CAA 204414 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||||| |||| || |||| | ||| |||||||||| || || | || || Sbjct 204415 GAAACAAGAGGACAGTTGTGGGCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATG 204474 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCAC 81709 |||||||||| | |||||| |||| || ||||| || | |||| | ||||| | | Sbjct 204475 TGTGAAATAACGCTCTGACATTAGGTTGTACGTTTCTATGGCAGCGTCG-ATATCTTGGC 204533 Query 81710 CGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCGCCT 81759 | || ||||| | ||| |||||||| | || | ||| || ||||| || Sbjct 204534 CATGGATACCAACAGCGACACGCATGATCAAATGCTGAGGTCTCTCGGCT 204583 >seq15377 Length=116332 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| ||||| ||||| || || ||| | ||||| || ||| Sbjct 81070 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 81129 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || |||| ||| | ||| || || || ||||| || || ||||||||||||||| Sbjct 81130 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 81189 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| ||||| ||| | || || | || | | ||||||| || Sbjct 81190 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTACAAC 81249 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || ||||||||||| | ||||| | ||||| Sbjct 81250 ATTCAGAAGGAATCAACGCTTCATCTAGTGCTTCGTCTAAGAGGTGG 81296 >seq2679 Length=221958 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || |||||||| || ||||| ||||| ||||||||||||||||| |||| ||| Sbjct 218306 GGTATCCCCCCAGACCAACAACGTCTTATTTTCGCTGGTAAGCAACTCGAAGATGGCCGT 218365 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || || || |||||||||||||||||||||| | ||| | |||||||| Sbjct 218366 TCCTTAAGCGATTACAACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCGTCTTCGT 218425 Query 27628 GGTGG 27632 ||||| Sbjct 218426 GGTGG 218430 >seq2291 Length=180 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| ||||| ||||| || || ||| | ||||| || ||| Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || |||| ||| | ||| || || || ||||| || || ||||||||||||||| Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || ||| | || ||||| ||||| ||| | || || Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGA 156 >seq11881 Length=132943 Score = 100 bits (110), Expect = 3e-16 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| || ||||| || ||||| || || ||||| || ||||||||||| Sbjct 44976 GCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGGCTC 44917 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||||| ||||| ||||| || || | ||||| || || |||||||||| |||||| Sbjct 44916 AAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGACGAG 44857 Query 64846 GGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACAT 64905 || || || || ||||| | | |||| | ||| || ||| | | || || || Sbjct 44856 GGCCTTCATACCGACTTTGCCTGTCTCTTGTTTACCCATCTGAAGAAAACCCCCTCCCAA 44797 Query 64906 GGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCC 64965 | | | ||| || | | |||||| |||||||| | |||||| | |||| | Sbjct 44796 GAGCGTGTAAAGAGCATCATCGCAGAGGCTGTTGAAATTGAGCAAGAATTCTTGACTGAC 44737 Query 64966 GCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTT 65025 || | || | ||| || |||||| | ||| | ||| || || || |||||| Sbjct 44736 GCTTTGCCTGTTAATCTTATTGGCATGAACGCCAACCTCATGTGCCAATACATTGAATTT 44677 Query 65026 GTAGCAGA 65033 || || || Sbjct 44676 GTTGCTGA 44669 >seq6568 Length=250849 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| || || || ||||| ||||| |||||||||||||| || |||| ||| Sbjct 220610 GGTATCCCTCCTGATCAACAACGTCTCATTTTCGCTGGTAAGCAACTTGAAGATGGCCGT 220669 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | || || ||| ||||||||||||| |||||||| | ||| | |||||||| Sbjct 220670 ACTTTGAGTGATTACAATATCCAAAAGGAATCTACTCTTCACTTGGTCCTCCGTCTTCGT 220729 Query 27628 GGTGG 27632 ||||| Sbjct 220730 GGTGG 220734 >seq802 Length=2293163 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/225 (68%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 ||| ||||| ||||| ||| || |||||| | ||| ||||||||||||| ||| Sbjct 2025892 ATCAATGACTTTGTTCAAGTTTTTCGTGACAACCTTGGCAACTTCATGAAGTTTCTCAAA 2025951 Query 80868 GTCGAA----TTGGTTCC--CCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 ||| || |||||| | | | ||||| || || || || |||||||| || Sbjct 2025952 GTCAAACGTCTTGGTTTCTGCATCAACAAACTTGGGCAGAGCAAGCGAAGCCAGATTACA 2026011 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 || |||||||| |||| | |||| | || | ||| || || |||| || || || Sbjct 2026012 AACAGCCACCTCGTCAGGAGATGTATATTCAATGATCTCTGTACACAGGTTGGATGAGGA 2026071 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || || ||||| || || || |||||||| | ||||| || || Sbjct 2026072 GATGGTGCCCAGATTCTTTTGATTTGACTTTTCATTGCAGGCATC 2026116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570198925703440