Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq15377 107 1e-18 seq513 102 5e-17 >seq15377 Length=116332 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | ||| || || ||||| |||||||| || ||||| Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | ||| ||||||| | ||||||||||||||| || ||||| || ||||| || || Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||||||||| || | | || |||| |||| || || Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTAT-CAATTCTGTCGGATGATTCTAC 81118 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| || || ||||| || || | || || || ||||| ||||| || Sbjct 81117 CTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq513 Length=239887 Score = 102 bits (112), Expect = 5e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||||||||||||||| ||| |||| || || Sbjct 208291 AGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGA 208232 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || ||||| || || | ||| |||||||| || || | || ||| Sbjct 208231 CCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCC 208172 Query 34609 TTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||||||| || | | || ||| || || | || ||||| | || Sbjct 208171 TTGTCTTGGATCTTTTGCTTGACATTAT-CAATCGTATCAGTGGATTCAACTTCTAATGT 208113 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTGTA 34716 || || || || || | || || || || || ||||| ||||||||| Sbjct 208112 AATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATATTTGATTGTA 208063 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| ||||| ||||| || || || || |||||| Sbjct 208528 CCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAA 208469 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| || ||||| || || | ||| |||||||| || || Sbjct 208468 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208409 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | || ||||||||| ||||||||| || | | || ||| | || | | | || | Sbjct 208408 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGA-CATTATCAATCATATCGGTAGAT-TCAA 208351 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| || ||||||||||| Sbjct 208350 CTTCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314669620111421