Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq513 140 3e-28 seq15377 122 8e-23 seq2291 102 7e-17 >seq513 Length=239887 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| | ||||| | ||||| ||| | | Sbjct 208074 ATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCATTACATTAGAAGTTGAATCCACT 208133 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | ||||| ||||| || |||||||| ||||| || || || || ||| Sbjct 208134 GATACGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAGACCAA 208193 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||| ||||| ||||| || || ||| || || ||| Sbjct 208194 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTTAGACTATAAC 208253 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || |||||| | ||| | || ||||| || Sbjct 208254 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTCCGTGGTGGTAT 208303 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || || ||||||| | ||||| ||| | || Sbjct 203108 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTAGAAGTTGAATCTACC 203167 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||| | ||||| |||||||||||||| || ||||| || || || || ||| Sbjct 203168 GATATGATTGATAATGTCAAGCAAAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 203227 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||| | || | ||||||||| ||||| ||||| Sbjct 203228 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGA 203262 >seq15377 Length=116332 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | || || ||| | ||| Sbjct 81070 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 81129 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| ||||| || |||||||||||||| || || || || || Sbjct 81130 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 81189 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| || | ||||| |||||||| |||||| | || |||| || || ||||| Sbjct 81190 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGAC-GGGCGCTCGTTGTCAGACTACAA 81248 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || | ||| | || | ||| | | ||||| || Sbjct 81249 CATTCAGAAGGAATCAACGCTTCATCTAGTGCTTCGTCTAAGAGGTGGTAT 81299 >seq2291 Length=180 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || ||| | || || ||| | ||| Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| ||||| || |||||||||||||| || || || || || Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || | ||||| |||||||| |||||| Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGAC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434833389762240