Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq15377 100 2e-16 seq513 93.3 3e-14 seq2291 91.5 1e-13 >seq15377 Length=116332 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || || |||||||| ||| || || | || || ||| Sbjct 81067 AATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCA 81126 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || | ||| ||||| ||||| || |||||||||||| |||| | Sbjct 81127 TCCGACAGAATTGATAAT--GTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAG 81184 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || |||||||| |||||||| || |||| ||| ||||| || | Sbjct 81185 ACCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACT 81244 Query 27965 ACAACATCCAAAAAGA 27980 ||||||| || || || Sbjct 81245 ACAACATTCAGAAGGA 81260 >seq513 Length=239887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||||||||| ||| |||||| | || || ||| ||| Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | | ||| | ||| ||||| ||||| || ||||| ||||| |||| || | Sbjct 208362 GATATGATTGATAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACC 208419 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| ||||| || ||||| || || | || | | || || |||| Sbjct 208420 AACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACA 208479 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || ||| | |||||||| | ||| | ||||| || Sbjct 208480 ATATCCAGAAGGAATCTACTCTTCATTTGGTACTTCGTCTTCGTGGTGG 208528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| || || || ||||||||||| || |||||| | || || ||| | Sbjct 208071 AATATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCATTACATTAGAAGTTGAATCC 208130 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || | ||||| | ||| ||||| ||||| || ||||| |||||| |||| | Sbjct 208131 ACTGATACGATTGATAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAG 208188 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | ||||| ||||| || ||||| || || | || | | | || | Sbjct 208189 ACCAACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTTAGACT 208248 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| ||||| || ||| | || |||||| | ||| | ||||| || Sbjct 208249 ATAACATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTCCGTGGTGG 208300 >seq2291 Length=180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || |||||||| ||| || || | || || ||| || Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| || |||||||||||| |||| || | Sbjct 62 GACAGAATTGATAAT--GTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACC 119 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| |||||||| || |||| ||| ||||| || |||| Sbjct 120 AGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTACA 179 Query 27968 A 27968 | Sbjct 180 A 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355794581189499