Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq513 158 3e-33 seq15377 111 4e-19 seq2291 96.9 8e-15 seq2679 93.3 1e-13 seq7507 87.8 4e-12 >seq513 Length=239887 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| |||||||| || ||| || | |||||| Sbjct 208285 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCT 208226 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | |||||||| ||||| ||||| ||||||||||| || |||| ||||||||||| Sbjct 208225 TCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 208166 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || || || || |||| | |||||| || | || || ||| Sbjct 208165 TGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTC 208106 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || |||||||| || || | ||||| || Sbjct 208105 TTGCCAGTAAGAGTCTTAACGAAGATTTGCATATT 208071 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||||| || || || ||||| || || || | ||| || Sbjct 208523 ACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGT 208464 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | |||||||| ||||| ||||| ||||||||||| || |||| || Sbjct 208463 ACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCC 208404 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||||| || || || || || | || | |||||| || | Sbjct 208403 TTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAA 208344 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| || || || | |||||| Sbjct 208343 CGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | |||||||| ||||| ||||| ||||||||||| || |||| |||||||| Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||||| || || || || || | || | |||||| || | || || Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || || | |||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq15377 Length=116332 Score = 111 bits (122), Expect = 4e-19 Identities = 161/226 (71%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || || || || || ||||| || || | | | | || ||| Sbjct 81281 AGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGACAACGAGCGCCCGTCT 81222 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || || || || ||||| | ||||| ||||| ||||||| ||||| ||||| Sbjct 81221 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 81162 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || || || |||| || ||| ||||| | |||||| || Sbjct 81161 TGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTT 81102 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTTG 211128 || || || || ||||| || || | ||||| || || ||||||| Sbjct 81101 TTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT-TGTTTACTTG 81057 >seq2291 Length=180 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || || || || ||||| | ||||| ||||| ||||||| ||||| Sbjct 159 CCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCT 100 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| ||||||||||| || || || || || |||| || ||| ||||| | |||| Sbjct 99 TTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTG 40 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| || || | ||||| Sbjct 39 ATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq2679 Length=221958 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||||||||| || ||||||||||| ||||| | || Sbjct 218425 ACGAAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAATCGCTTAAGGA 218366 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | |||||||| || ||||| || ||||| ||||| ||||||||||| || || Sbjct 218365 ACGGCCATCTTCGAGTTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGGGG 218312 >seq7507 Length=243275 Score = 87.8 bits (96), Expect = 4e-12 Identities = 196/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 |||| |||||||||||||| ||||| ||||| || || ||||| || | || Sbjct 203816 TTCTGTTGGTTGCTCTTTCTATTGCAA---GCATCCTTATAGAGCATGAAAGGATTACCG 203872 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 |||| ||||||| | | ||| || |||||||| || || || || | | | Sbjct 203873 GTTTCAGTTTGAGCCTCCAAGATGGCATACCAAAGCTTTTGTGCCTTGATGGTTTCTCTA 203932 Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270 ||| | |||||| ||| |||| || | | || |||||| || | || ||| Sbjct 203933 GCTCTGCCTTCACGCTCATACTGTTCAAACAAGGTCTTGAATTCATCGCCCCACACTTCA 203992 Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330 || || |||||||| ||||| ||||||||| ||||| ||||| || | ||||| Sbjct 203993 CATAGGCCAGGAGCCTCGTTGGGACAGAAGAGAGACCACTCACCGTTATCTCTGACTCGC 204052 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCAT 178383 | ||| ||||| |||| ||| | ||||| || | || | |||||| || Sbjct 204053 TCCATAAAGAGATCAGGCACCCAAAGAGCATAAAACAAATCGCGGGCTCTAAT 204105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158919764983505