Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15377 113 3e-20 seq2291 98.7 7e-16 seq513 98.7 7e-16 >seq15377 Length=116332 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| || || || || || ||||| |||||| | || || || || Sbjct 81067 AATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCA 81126 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||| |||| | | || ||||| || |||||||||||| | || ||||| Sbjct 81127 TCCGACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGAC 81186 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || |||||||| |||||| | ||||||| ||| | || || ||| Sbjct 81187 CAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTAC 81246 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || || || || | ||| |||| Sbjct 81247 AACATTCAGAAGGAATCAACGCTTCATCTAGT 81278 >seq2291 Length=180 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || ||||| |||||| | || || || || | Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | | || ||||| || |||||||||||| | || ||||| || Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 || ||||| || |||||||| |||||| | ||||||| Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACG 158 >seq513 Length=239887 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || || ||||| || || | |||||||| || || Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | | || ||||| || ||||| ||||| | || ||||| ||| Sbjct 208362 GATATGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 208421 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || |||||||| ||| | ||||| | || ||| | || ||||| Sbjct 208422 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACAAT 208481 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 208482 ATCCAGAAGGAATCTACTCTTCATTTGGT 208510 Score = 95.1 bits (104), Expect = 8e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || ||||| || || | |||||||| || || Sbjct 203108 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTAGAAGTTGAATCTACC 203167 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | | || ||||||||| || || |||||| | || ||||| ||| Sbjct 203168 GATATGATTGATAATGTCAAGCAAAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 203227 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 || ||| | || || |||||||| ||| | ||||| Sbjct 203228 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGA 203262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337945183503596