Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq513 158 3e-33 seq15377 132 1e-25 seq2291 116 9e-21 seq2679 105 2e-17 seq14076 86.0 1e-11 >seq513 Length=239887 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||| | || || || | ||| | |||||| Sbjct 208285 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCT 208226 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct 208225 TCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 208166 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| || || || || | || ||| || ||||| || || ||| Sbjct 208165 TGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTC 208106 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||| || | ||| | |||||| || Sbjct 208105 TTGCCAGTAAGAGTCTTAACGAAGATTTGCATATT 208071 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| ||||| || |||| |||||| || | | ||| Sbjct 208523 ACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGT 208464 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 208463 ACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCC 208404 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||||||||| ||| || || | || | | ||| || ||||| Sbjct 208403 TTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAA 208344 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || ||||| || | |||||| | ||| | ||||| Sbjct 208343 CGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||| Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || |||||||| ||| || || | || | | ||| || ||||| || || Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | ||| || | ||| | ||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq15377 Length=116332 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || ||||| || || | ||||| || | ||| | | ||| ||| Sbjct 81281 AGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGACAACGAGCGCCCGTCT 81222 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || || || ||||| | ||||| ||||| || ||||||||||| |||||| Sbjct 81221 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 81162 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| || || |||| || | ||| || || || ||||| || Sbjct 81161 TGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTT 81102 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTT 225726 ||||| || | || || | ||| | |||||| || || |||||| Sbjct 81101 TTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT-TGTTTACTT 81058 >seq2291 Length=180 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || | ||| | | ||| ||||||| || || || || ||||| | ||||| Sbjct 180 TTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGC 121 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||||||||| |||||||||||||||||||| ||| || || |||| Sbjct 120 TGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCG 61 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||| || || || ||||| || ||||| || | || || | ||| | |||||| Sbjct 60 GATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq2679 Length=221958 Score = 105 bits (116), Expect = 2e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||||||||| ||||||| ||||||||| || | Sbjct 218425 ACGAAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAATCGCTTAAGGA 218366 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| |||||||| ||||| ||||||||||| || || ||||| Sbjct 218365 ACGGCCATCTTCGAGTTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGGGGGATACC 218306 Query 225612 T 225612 | Sbjct 218305 T 218305 >seq14076 Length=174311 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || ||||| || || |||||||||||||| |||||||| Sbjct 137924 GAAAATTTGACCATCAGTAATGGAAATAACGTTAGTGGGGATATAAGCAGAGACATCACC 137865 Query 4530 TGCTTGTGTTTC 4541 |||| ||||| Sbjct 137864 ACCTTGGGTTTC 137853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192292277492078