Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq14752 241 1e-58 seq11881 170 2e-37 >seq14752 Length=160396 Score = 241 bits (266), Expect = 1e-58 Identities = 569/848 (67%), Gaps = 26/848 (3%) Strand=Plus/Minus Query 23199 ACTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTT 23258 |||| ||||||||| |||||| || |||||| |||| ||||| || || || Sbjct 138089 ACTAGACATAACACCGGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTT 138030 Query 23259 ACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT 23318 || | || || || |||||||||||||| || || || ||| || | ||| Sbjct 138029 TCCTTGCAAAGAAATCAGCTCCATAAAATCAAAGGGGTTTGAGACATTGTA---ATTTTT 137973 Query 23319 A-------CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACA 23371 | || || | | || || || | || || |||||| || ||||| |||| Sbjct 137972 AGGGAAACCAAGAGA-TACC---AAGAGACGGTCGGCAACAAATCTAACGTATTGGCACA 137917 Query 23372 TCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTT 23431 |||| | | ||| ||||| |||| || |||| | ||||| ||| || | || Sbjct 137916 TCAACTTGTCGTTCATACCAATTAAACGCACAGGAAGAGAATCATTAAAGTATGACTCTT 137857 Query 23432 CAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTA 23491 | || ||| || || | || ||||||| || | ||| | ||| ||| | | Sbjct 137856 CGATCTCAACCGCCTCAGTGATAATTTGAAGAACAGTTTCATGTGAAGGCTGATCAATCA 137797 Query 23492 AATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATT 23551 ||| | |||||| | ||| |||||||| ||||||||||||||| | | |||| |||| Sbjct 137796 AATGATGAAACAAGAGGCATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATT 137737 Query 23552 CATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAA 23611 ||||||||| || || || |||||||| || || || || | |||||| || | |||| Sbjct 137736 CATTAGAAAGAGTCAAACCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAA 137677 Query 23612 ATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACC-AAAT 23670 | ||||| |||||||| |||||||| ||||| ||||| || |||| ||| ||| ||| Sbjct 137676 ACGATCCAGAAAAGAAGATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAG 137617 Query 23671 GTTGCATT--ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA-CACAC 23727 |||| || | || ||| |||||||| | ||| |||||||| || | ||| Sbjct 137616 GTTGGTTTGATTCATTAGAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACA- 137558 Query 23728 TCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCAT--TATCTGTTATATATG 23785 ||| ||||| || || || | | || | || ||||| || |||| | || || | Sbjct 137557 GGAATGGTTTCGATGGCATT--AAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAG 137500 Query 23786 TATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCAT 23845 |||| || | || ||||||||||| ||||| || ||||| |||||||| || | Sbjct 137499 TATCGATCAATAGCGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGT 137440 Query 23846 AAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGT 23905 | || || | || || | | | || |||| | || |||| | | ||| || | Sbjct 137439 AGAAGCACTTTGCCTCGGCTACCTTGACTTCATCGCAGAAGTTTTTCACCAGATTCTCAT 137380 Query 23906 TAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAA--AATGTCT-TT 23962 | |||||||||||| || ||||||||| || | ||| |||| ||| ||| | Sbjct 137379 TGACAATACCATCAGAAGTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCAT 137320 Query 23963 CATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTG 24022 ||||| || | || | ||| ||| | | || ||||| | ||||||||| || ||| Sbjct 137319 CATCATTTAGTTTTTCCTCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTG 137260 Query 24023 TCCAAAAA 24030 |||| ||| Sbjct 137259 TCCAGAAA 137252 Score = 167 bits (184), Expect = 2e-36 Identities = 551/844 (65%), Gaps = 26/844 (3%) Strand=Plus/Minus Query 23202 ATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACC 23261 |||||||||||| ||| || || |||||| |||| || || |||||||| || Sbjct 136016 ATTCATAACACCAGCACGTTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCC 135957 Query 23262 CTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA-- 23319 | | || || |||||||||||||| ||||||||| |||||| |||| Sbjct 135956 TTGAAGGGAAATCAAATCCATAAAATCAAAGGGATTAGAAACATTATAGT--GCTTGGGG 135899 Query 23320 ----CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAA 23375 || || || | | || | ||| || |||||||| | || |||||||| | Sbjct 135898 AAACCAAGAGAAACCATC----AGACGATCAGCAACAAATTCGACGTACTGACACATTAG 135843 Query 23376 ATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAAT 23435 |||| || ||||| || | | | || || | || || | || || || || || Sbjct 135842 TTCATCATTCATACCGATCAATCTAACGGGCAATGCTTCTTTGAAAAAACTTTGCTCTAT 135783 Query 23436 GGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 || || || | | || |||| || | ||| | |||| ||| | | | Sbjct 135782 CTCGACGGCCTCCGTCAAAATCTGAAGAACAGTTTCATGGGAAGGTTGATTAATCATGTG 135723 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 | || || | ||| |||||||| ||| || |||||||| | | |||| || ||||| Sbjct 135722 GTGGAATAAAAGACAGCCAAAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATT 135663 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 || | || || || |||||||| || || ||||| | |||||| || | ||||| || Sbjct 135662 GGAGAGAGTCAAACCAGGCATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGA 135603 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACA-AGACGTGTACC-AAATGTT 23673 || |||||||| | ||| || | | |||||||| ||| | |||| | ||| ||| Sbjct 135602 GCCTGAAAAGAAGACACCTTCGATAATAGCAAAGGC-ACAGATACGTACGGCGAAAGGTT 135544 Query 23674 GCATTATAATCA---GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA 23730 | || | || | |||||||| | ||||| |||||| || | | Sbjct 135543 GG-TTGGATTCGTTGGCGATCCATTTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGA 135485 Query 23731 ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCA 23790 || || || || || || || | ||| ||||| | ||| | ||||| ||||| Sbjct 135484 ATAGTCTCTATGGCATTAAACAAAAATTCCTTTTCAACGGGATCCTTGATATACGTATCG 135425 Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 || | || ||||||||||| ||||| || ||||| |||||||| || |||||| Sbjct 135424 ATCAATAGGGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAA 135365 Query 23851 CATCTAGCTTCAGACAAT-TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 ||| |||| || | | || | ||| |||| |||| || | |||||||||| || || Sbjct 135364 CATTTAGCCTC-GCCTATCTTAACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGAC 135306 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGT 23969 || ||||| || ||||| ||||| | ||| || || || | |||||| | Sbjct 135305 GATGCCATCCGAAGTTGCAAAAAAAGCTAATACACGGCCGATGAAGTGGCGTTCATC-CT 135247 Query 23970 TGATAA--TTTT--TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCC 24025 || | | |||| | ||||||| || ||||| ||||||||||| || || || |||| Sbjct 135246 TGTTCAGCTTTTCCTCCCAATCAAGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCC 135187 Query 24026 AAAA 24029 | || Sbjct 135186 AGAA 135183 >seq11881 Length=132943 Score = 170 bits (188), Expect = 2e-37 Identities = 464/700 (66%), Gaps = 14/700 (2%) Strand=Plus/Plus Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 || || || || ||||||||||| ||||| ||||| | | ||| || || || || Sbjct 44663 AGTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGA 44722 Query 23398 TTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT 23457 || || || | || ||| |||||| || ||||| |||||| ||| || || Sbjct 44723 TTAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGAT- 44781 Query 23458 TGAACAATA-ACT-TCTTCACTAGGTGGATATTTTAA-ATACTTAAACAATAAACATGCA 23514 | | || || |||| ||| || | | || | || ||||||| | ||| ||| Sbjct 44782 -GCTCTTTACACGCTCTTGGG-AGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCA 44839 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || || ||| ||||| || || | | ||||||||||||||||| || || || ||| Sbjct 44840 AAGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGC 44899 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || | || || || || | ||| || || | |||||||| || || ||||| ||||| Sbjct 44900 ATGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCT 44959 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 || || || ||||| || || | | | | |||| | || || |||| |||||| Sbjct 44960 TCGACGGCAGCAAAAGCAACTAATCTTTCAGCAAA---AGAATCATTGCCAGAGATCCAT 45016 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGA 23754 || | ||| | |||||| || | ||| || |||||||| || | ||||| Sbjct 45017 TTGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGC 45076 Query 23755 AAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAA 23814 | ||||| | |||| | ||||| || ||||| | | ||| || | |||| | Sbjct 45077 ATCTCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCA 45136 Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874 ||||| |||||||| || || || || ||||| |||||| | ||||||| | | || Sbjct 45137 TGAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACT 45196 Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934 |||| | |||| ||| | | |||||||| |||| ||||||| | ||||||||| Sbjct 45197 TCATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAAC 45256 Query 23935 GCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGATAAT-TTTTTCCAATCATT 23990 || | ||| ||||| | |||||| ||| || || | ||| |||||||| Sbjct 45257 GCCAACACACGAGAGATAAAGTATCTTTCGTTTTCA-TTCATCTTGGTTTCCCAATCATG 45315 Query 23991 AATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 ||| || || || || | ||| || | ||||| ||| Sbjct 45316 TTGATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAA 45355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521386068651800