Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq15377 125 5e-24 seq2291 104 2e-17 seq513 93.3 3e-14 >seq15377 Length=116332 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | | ||| || |||||||| ||||| || |||||||| Sbjct 81303 TTGCATACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTA 81244 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | |||| |||| || | || || ||||||||||||||||| ||||| || Sbjct 81243 GTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTC 81184 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||| || || ||||| ||||| | | | || |||||| || Sbjct 81183 TGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGA 81124 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 81123 TTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq2291 Length=180 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 44176 GCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235 |||| |||| || | || || ||||||||||||||||| ||||| |||| ||| | ||| Sbjct 163 GCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACC 104 Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295 ||| || || ||||| ||||| | | | || |||||| ||||| ||||||| Sbjct 103 TTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAA 44 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || || ||||| ||||| |||||||| Sbjct 43 AGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq513 Length=239887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||||| ||||| || || || || | || || Sbjct 208282 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCT 208223 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||| || || | ||| || || |||| || | ||||||||| || Sbjct 208222 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGG 208163 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | | || || || | |||||| || || | ||||| ||||| Sbjct 208162 ATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTG 208103 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAAAA 44351 || || || ||||| |||||||||||||| || ||| || ||| Sbjct 208102 CCAGTAAGAGTCTTAACGAAGATTTGCAT-ATTTGATTGTAAA 208061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359921794492029