Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1243 118 1e-21 seq13988 98.7 1e-15 >seq1243 Length=10759 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 155864 GTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAA 155923 ||| | ||| | ||||| ||||||||||||||||| || | |||||||| || | || Sbjct 8247 GTGGATCTTGAGGATTTGGAGACGCCCCTTTTCATCAGGCAGGCCAATTTCCATGTGCAC 8188 Query 155924 TTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACC 155983 || | || ||||| | | ||| ||||| || || | ||| ||||||||||||||| Sbjct 8187 CTCAAGACGGCCAGGACGCAGTAAGGCTTCATCGATCATGTCCTTTCTGTTGGTCATACC 8128 Query 155984 TATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGAC 156043 || || ||||||||||| || || || ||||| ||||| | || |||||||| || Sbjct 8127 AATAATCAAAATGTTGTTCAATTGCTCCACGCCGTCCATTTTCGCCAGCAATTGATTCAC 8068 Query 156044 TACGGCGTCG 156053 || | |||| Sbjct 8067 GACAGAGTCG 8058 >seq13988 Length=264055 Score = 98.7 bits (108), Expect = 1e-15 Identities = 290/448 (65%), Gaps = 22/448 (5%) Strand=Plus/Plus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||||| || || || || |||||||||||| | || || || || || | Sbjct 239592 AAGGTGATTTGGGGCCAGTGTATGGTTTTCAATGGCGCCACTTCGGTGCCAAATATGTTG 239651 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 |||||||| | | || ||| |||||||| |||||||||||| | || || | | Sbjct 239652 ATTGCGACACAGACTATACAGGGCAAGGCGTTGATCAACTGCAAGAGATAATTGAAAAGA 239711 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | || | || ||| |||||| ||||| | ||| ||| |||||||| | || || Sbjct 239712 TCAAGAATAATCCCACCGATCGCCGTATCATTTTGAGCGCTTGGAATCCTGCAGACATCC 239771 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCA------------ 50700 | | |||||| || ||||||| ||| ||||||||||||| || Sbjct 239772 CCAGCATGGCTTTACCGCCTTGTCATGCTTTCTGTCAATTTTATGTCAGTACTCCTCCTG 239831 Query 50701 CAGACAAT------GTT---TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTT 50751 | ||| | | | | |||||| | ||||| ||||| |||||||| Sbjct 239832 CTGACGGTAGCCGCGCTAAACTGTCCTGTGTTTTGTATCAGAGATCTTGCGATATGGGCC 239891 Query 50752 TAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCG 50811 | |||||||| ||||| | || ||| || |||| || | |||| ||||| | | Sbjct 239892 TGGGCGTTCCATTCAATATTGCAAGTTATGCCCTATTGACTCGTATGATTGCTCATGTCA 239951 Query 50812 TCGATATGAAACCGGGAGAATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATC 50871 || || | || ||||| || || ||||| | || || | ||| | ||| | |||| Sbjct 239952 CAGACTTGGATCCTGGAGAGTTCATACATACCATGGGTGATACCCATGTGTACGTAGATC 240011 Query 50872 ACGTCGATGCTTTAAAGGAGC-AATTGA 50898 | | ||||| | ||||| | |||||| Sbjct 240012 ATATAGATGCCCTGAAGGAACAAATTGA 240039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666944811813720