Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15377 136 1e-26 seq2291 122 2e-22 >seq15377 Length=116332 Score = 136 bits (150), Expect = 1e-26 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| ||||| | ||||| ||| || ||| Sbjct 81073 CAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCCGAC 81132 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| |||||||| || ||||||||||| || ||||| ||||||||| Sbjct 81133 AGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAGCAA 81192 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC-TTG-CCGATTATAACG 178101 || | ||||| ||||| ||||| | ||||| || | ||| ||| | || || ||| Sbjct 81193 CGTTTGATCTTTGCCGGTAAACAATTAGAAGACGG--GCGCTCGTTGTCAGACTACAACA 81250 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || |||||||| || ||||| || Sbjct 81251 TTCAGAAGGAATCAACGCTTCATCTAGT 81278 >seq2291 Length=180 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| ||||| | ||||| ||| || ||| Sbjct 5 CAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCCGAC 64 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| |||||||| || ||||||||||| || ||||| ||||||||| Sbjct 65 AGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAGCAA 124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| ||||| ||||| | ||||| || Sbjct 125 CGTTTGATCTTTGCCGGTAAACAATTAGAAGACGG 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203490033582578