Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq513 111 1e-19 seq15377 104 2e-17 >seq513 Length=239887 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || |||||||| || || ||||| || Sbjct 208528 CCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAA 208469 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| || || || |||||||| | |||| Sbjct 208468 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208409 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| |||||||| | | | | || | ||| | || || || Sbjct 208408 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCA-TATCGGTAGATTCAAC 208350 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || ||||| || || || || || |||||||||||||| Sbjct 208349 TTCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||| |||||||||||||| | Sbjct 208300 CCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAA 208241 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| || || || |||||||| | |||| Sbjct 208240 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208181 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||| ||| |||||||| | | | | | || || | || || || Sbjct 208180 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCA-ATCGTATCAGTGGATTCAAC 208122 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || || || ||||| ||||| || ||||| || Sbjct 208121 TTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATATT 208071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||||||||| || || || |||||||| | ||||| | ||||| || ||| Sbjct 203253 TGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATT 203194 Query 41777 TTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 |||||||| | | | | || | ||| | || || || || | || || |||||||| Sbjct 203193 TTTTGCTTGACATTATCAATCA-TATCGGTAGATTCAACTTCTAATGTAATAGTTTTACC 203135 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| |||||||||||||| Sbjct 203134 AGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq15377 Length=116332 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | |||||| | ||| ||||| ||||| |||||||||||||| ||||| || Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | | |||| |||| || | || || ||||| || |||| || || ||||| | ||| Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || ||||| ||| |||||||| | | | | | ||||| || || || Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCA-ATTCTGTCGGATGATTCTAC 81118 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || ||||| || || || ||||| |||||||| ||||| || Sbjct 81117 CTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462213636904400