Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq193 91.5 1e-13 >seq193 Length=296419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || || || || ||||| ||||| ||| ||| | | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| ||| ||||| |||||| | || ||||||| Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| | |||||| ||| | | || |||||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||||||||||||| | || ||||| Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 33126 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || || ||||| ||||| ||| ||| | | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||| ||| ||||| |||||| | || ||||||| Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| | |||||| ||| | | || |||||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||||||||||||| | || ||||| Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 32670 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || || || || ||||| ||||| ||| ||| | | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||| ||| ||||| |||||| | || ||||||| Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| | |||||| ||| | | ||||||||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||| ||||||||| | || ||||| Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 32898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || || || || ||||| ||||| ||| ||| | | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| ||| ||||| |||||| | || ||||||| Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| || |||||| | |||||| ||| | | || |||||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||| ||||||||| | || ||||| Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 33354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||| ||| | || || || || || ||||| ||||| ||| ||| | Sbjct 33800 AAAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATC 33741 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | | | ||| ||| ||| ||||| |||||| | || ||| Sbjct 33740 TTCTGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGA 33681 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||||||| | | || ||||| || || ||| | |||||| ||| | | || || Sbjct 33680 TCAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTA 33621 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||| || ||||| ||||||||| | || ||||| Sbjct 33620 CAATATTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 33582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334788879960