Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq193 159 5e-34 seq154 159 5e-34 seq135 127 3e-24 >seq193 Length=296419 Score = 159 bits (176), Expect = 5e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| |||| || |||||||| ||| |||| ||||| | | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||||||||||| |||||||| ||||| |||||| Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| ||| | || || | ||||| ||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| ||| | || || || |||||| | || |||||||| ||| || Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTATGCAAATTT 32875 Score = 159 bits (176), Expect = 5e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| |||| || |||||||| ||| |||| ||||| | | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||| |||||||| ||||| |||||| Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| ||| | || || | || || ||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| ||| | || || || |||||| | || |||||||| ||| || Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTATGCAAATTT 33103 Score = 159 bits (176), Expect = 5e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| |||| || |||||||| ||| |||| ||||| | | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||| |||||||| ||||| |||||| Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| ||| | || || | || || ||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| ||| | || || || |||||| | || |||||||| ||| || Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTATGCAAATTT 33331 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| |||| || |||||||| ||| |||| ||||| | Sbjct 33797 AATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTC 33738 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| |||||||| ||||| ||||| Sbjct 33737 TGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCA 33678 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || || |||||||| ||| | || || | || || || Sbjct 33677 ACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTACAA 33618 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||||||| ||| | || || || |||||| | || |||||||| ||| || Sbjct 33617 TATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTATGCAAATTT 33559 Score = 149 bits (164), Expect = 9e-31 Identities = 176/237 (74%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || |||||||| ||| |||| ||||| | | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||||||||||| |||||||| ||||| |||||| Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| ||| | || || | || || ||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAA 124774 |||||||||||||| ||| | || || || |||||| | || ||||| |||||||| Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGAAATTAAAAA 32648 >seq154 Length=675934 Score = 159 bits (176), Expect = 5e-34 Identities = 199/271 (73%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 ||||| |||||| |||||| | ||||| ||| ||||||||||||||||||||| Sbjct 471062 TGATCTTTTCCTTGTCCTGTATAGTCTGTATGACAATCTATATATTTAGCACCAAAATGA 471003 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGt 205809 |||||||| ||||||| | ||| |||||||| ||||||| ||||| | || ||| | Sbjct 471002 CGCCATTGCCAACCATATATTGGTCCTAAATCCCCTTCTTCTCTATTTGTTAATCCAATT 470943 Query 205810 ttttttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGA 205869 || | | | ||| || |||||| ||||||||||||| || ||| ||||| | | Sbjct 470942 TTATCAAGAAATTCACGAGAACCATTTCCATCCCAAATATGAAT--ATTTTTTTTTGATA 470885 Query 205870 ATA--TTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCC 205927 ||| |||| || ||| || |||||||| || |||||||| | | |||||| Sbjct 470884 ATATTTTTGAATCAGTATCACCTCTAATAAACCAAAACAATTCTTCTGCTACTCCTCTAA 470825 Query 205928 AAAACATTGATTTTGTTGTAAATAATGGAAA 205958 |||| | | ||||||||| ||||| ||||| Sbjct 470824 AAAATACTTTTTTTGTTGTTAATAAAGGAAA 470794 Score = 102 bits (112), Expect = 1e-16 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 205319 tttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCAT 205378 ||||||| |||| ||||| ||||| |||| | | || | ||||| || | | | Sbjct 471598 TTTTTATAATTAACTTTGGGAATGGTCTTGGATTTCTTTTAATTTGTTCTTGGAGAGCTT 471539 Query 205379 TAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAA--TTCATATGGTTT 205436 |||||||||| ||||||||| | || || |||| ||||||||| ||| ||||| Sbjct 471538 CAATATGATTATTATATATATGAGTATCTCCCATATCATGAATAAAAGTTCCA--GGTTT 471481 Query 205437 TAAATT--AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 |||| | ||| || ||||| | | | || ||||| |||||| |||| ||| ||| Sbjct 471480 --AATTCCAATTACGTGGGCAATTAAACATGTTAATAAGGAATAACTGGCAATATTGAAT 471423 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATA 205529 ||||| || || || | |||| |||||||||||| Sbjct 471422 GGTACGCCCAATCCAACATCACATGATCTTTGATA 471388 >seq135 Length=816381 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124545 ATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACA 124604 || ||| | || || || ||||| || || || || |||| ||||| || |||||| Sbjct 3578 ATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATACT 3637 Query 124605 ATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGG 124664 ||| ||| | || || ||||||||||| |||||||| ||||| ||||||||| | Sbjct 3638 ATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGT 3697 Query 124665 CTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAA 124724 | || || || || || |||||||| ||| | || || | ||||| || |||||| Sbjct 3698 TTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTACAACATTCAA 3757 Query 124725 AAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||| | ||| | ||| | |||||||| |||||| ||| || Sbjct 3758 AAGGAATCCACTCTCCATCTTGTTCTTCGTTTACGTGGTGGTGGTAAGAA 3807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453809177600