Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq193 107 1e-18 seq182 89.7 4e-13 >seq193 Length=296419 Score = 107 bits (118), Expect = 1e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATCCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAA 18144 || ||||| | ||| || || || | |||| || | |||||| || ||||||||||||| Sbjct 32645 TTTTTTTTAATTTCCACCACGAAGACGTAAG-ACTAAGTGAAGAGTAGATTCTTTTTGAA 32703 Query 18145 TGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTT 18204 | |||||||| | | || | |||||| |||||||| || ||| | || | | || Sbjct 32704 TATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTT 32763 Query 18205 GTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGT 18264 ||||||| || | ||||||||||| ||| | | |||||| | | ||| ||||| Sbjct 32764 GTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGT 32823 Query 18265 CACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCA 18324 || | || ||| | || || |||| || || || ||||| ||||||||||||| Sbjct 32824 CAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCA 32883 Query 18325 T 18325 | Sbjct 32884 T 32884 Score = 102 bits (112), Expect = 6e-17 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| || | |||||| || |||||||||||||| |||||||| | | || | || Sbjct 33584 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33642 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| ||||| || || ||| | || | | ||||||||| || | |||||||||| Sbjct 33643 CTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33702 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||| | | |||||| | | ||| ||||||| | || ||| | || || Sbjct 33703 CTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33762 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| || || || || ||||| ||||||||||||||| Sbjct 33763 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTTT 33800 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| || | |||||| || |||||||||||||| |||||||| | | || | || Sbjct 33128 TAAG-ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33186 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| |||||||| || ||| | || | | ||||||||| || | |||||||||| Sbjct 33187 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33246 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||| | | |||||| | | ||| ||||||| | || ||| | || || Sbjct 33247 CTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33306 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || || || ||||| ||||||||||| Sbjct 33307 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| || | |||||| || |||||||||||||| |||||||| | | || | || Sbjct 33356 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33414 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| |||||||| || ||| | || | | ||||||||| || | |||||||||| Sbjct 33415 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33474 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||| | | |||||| | | ||| ||||||| | || ||| | || || Sbjct 33475 CTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33534 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || || || ||||| ||||||||||| Sbjct 33535 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| || | |||||| || |||||||||||||| ||||| || | | || | || Sbjct 32900 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCAT 32958 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| |||||||| || ||| | || | | ||||||||| || | |||||||||| Sbjct 32959 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33018 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||| | | |||||| | | ||| ||||||| | || ||| | || || Sbjct 33019 CTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33078 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || || || ||||| ||||||||||| Sbjct 33079 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 >seq182 Length=390966 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | ||| || | |||||| || ||||| ||||| ||||||||||| | Sbjct 118182 CCACCACGTAAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAA 118241 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| ||||| || || || ||||||| | |||||| || || Sbjct 118242 AGGGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGA 118301 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | || ||||| | | ||| |||||| || || Sbjct 118302 ATACCTTCCTTATCTTGGATCT-TAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAAC 118360 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| | || || || | ||||| || || |||||||| Sbjct 118361 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342927404840