Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq193 113 4e-20 seq135 93.3 4e-14 >seq193 Length=296419 Score = 113 bits (124), Expect = 4e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||||||| | || || ||||| || || | || |||||| | || Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| ||||| || || || || |||||||| | || || || || Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAG-ATTCAAGATAAGGAAGGTATTCCACCAGATCA 32994 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| |||| || ||||| ||||| || ||||| | | | ||| | ||||| | Sbjct 32993 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGA-TGGACGTACTCTTTCTGATTACA 32935 Query 31371 ACATTCAAAAAGAATCGACTCTTCA 31395 | |||||||||||||| |||||||| Sbjct 32934 ATATTCAAAAAGAATCCACTCTTCA 32910 Score = 109 bits (120), Expect = 5e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||||||||||||||||||| | || || ||||| || || | || |||||| Sbjct 33802 TCAAAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAA 33743 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | || |||| | | |||| ||||| || || || || |||||||| | || || Sbjct 33742 TCTTCTGACACTATTGAAAACGTCAAGTCAAAG-ATTCAAGATAAGGAAGGTATTCCACC 33684 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCG 31364 || || || ||| |||| || ||||| || || || ||||| | | | ||| | | Sbjct 33683 AGATCAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGA-TGGACGTACTCTTTCTG 33625 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCA 31395 | || || |||||||||||||| |||||||| Sbjct 33624 ACTACAATATTCAAAAAGAATCCACTCTTCA 33594 Score = 107 bits (118), Expect = 2e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||||||| | || || ||||| || || | || |||||| | || Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| ||||| || || || || |||||||| | || || || || Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAG-ATTCAAGATAAGGAAGGTATTCCACCAGATCA 33222 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| |||| || ||||| ||||| || ||||| | | | ||| | || || | Sbjct 33221 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGA-TGGACGTACTCTTTCTGACTACA 33163 Query 31371 ACATTCAAAAAGAATCGACTCTTCA 31395 | |||||||||||||| |||||||| Sbjct 33162 ATATTCAAAAAGAATCTACTCTTCA 33138 Score = 107 bits (118), Expect = 2e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||||||| | || || ||||| || || | || |||||| | || Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| ||||| || || || || |||||||| | || || || || Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAG-ATTCAAGATAAGGAAGGTATTCCACCAGATCA 33450 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| |||| || ||||| ||||| || ||||| | | | ||| | || || | Sbjct 33449 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGA-TGGACGTACTCTTTCTGACTACA 33391 Query 31371 ACATTCAAAAAGAATCGACTCTTCA 31395 | |||||||||||||| |||||||| Sbjct 33390 ATATTCAAAAAGAATCCACTCTTCA 33366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||| | || || ||||| || || | || |||||| | || Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| ||||| || || || || |||||||| | || || || || Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAG-ATTCAAGATAAGGAAGGTATTCCACCAGATCA 32766 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| |||| || ||||| ||||| || ||||| | | | ||| | || || | Sbjct 32765 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGA-TGGACGTACTCTTTCTGACTACA 32707 Query 31371 ACATTCAAAAAGAATCGACTCTTCA 31395 | |||||||||||||| |||||||| Sbjct 32706 ATATTCAAAAAGAATCTACTCTTCA 32682 >seq135 Length=816381 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 ||||| || || ||||| ||||| || || || ||| | || |||||| | || || | | Sbjct 3578 ATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATACT 3637 Query 31259 GTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 | |||| ||||| | || || |||||||| | || || || || || ||| Sbjct 3638 ATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGT 3697 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCA 31377 |||| |||||||| || || || ||||| | | | ||| | ||||| |||||||| Sbjct 3698 TTAATCTTCGCTGGTAAGCAATTAGAAGA-TGGACGTACTCTTTCTGATTACAACATTCA 3756 Query 31378 AAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| ||||| ||||| ||||| || ||| Sbjct 3757 AAAGGAATCCACTCTCCATCTTGTTCTT 3784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765107277440