Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq193 89.7 5e-13 >seq193 Length=296419 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || ||||||||||| || ||||| Sbjct 32886 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAA 32945 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || || Sbjct 32946 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33004 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | ||| | ||||| | | || | Sbjct 33005 AATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAA 33063 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || || || |||||||| ||||||||| Sbjct 33064 CTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| ||||| ||||||||||| || || || Sbjct 33114 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 33173 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || || Sbjct 33174 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33232 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | ||| | ||||| | | || | Sbjct 33233 AATACCTTCCTTATC-TTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAA 33291 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || || || |||||||| ||||||||| Sbjct 33292 CTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33341 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| ||||| ||||||||||| || || || Sbjct 32658 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 32717 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || || Sbjct 32718 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 32776 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | ||| | ||||| | | || | Sbjct 32777 AATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAA 32835 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || || ||||| || || ||||||||| Sbjct 32836 CTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCATA 32885 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||||| || || ||||||||||| || || || Sbjct 33342 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 33401 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||||||| | || | |||||| ||||| || || Sbjct 33402 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33460 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | ||| | ||||| | | || | Sbjct 33461 AATACCTTCCTTATC-TTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAA 33519 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || || || |||||||| ||||||||| Sbjct 33520 CTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062561414400