Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq193 109 6e-19 >seq193 Length=296419 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| |||| || ||||||||||| || |||||||| Sbjct 32886 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAA 32945 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || || Sbjct 32946 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33004 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 33005 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33064 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || || || |||||||| ||||||||| Sbjct 33065 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33113 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| |||| |||||||||||||| || ||||| || Sbjct 33114 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 33173 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || || Sbjct 33174 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33232 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 33233 AATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAAC 33292 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || || || |||||||| ||||||||| Sbjct 33293 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33341 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| |||| |||||||||||||| || ||||| || Sbjct 32658 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 32717 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || || Sbjct 32718 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 32776 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 32777 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 32836 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || || ||||| || || ||||||||| Sbjct 32837 TTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCATA 32885 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| |||| || ||||||||||| || ||||| || Sbjct 33342 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 33401 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| | || | |||||| ||||| || || Sbjct 33402 AGAGTACGTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33460 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 33461 AATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAAC 33520 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || || || |||||||| ||||||||| Sbjct 33521 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33569 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| |||| || ||||||||||| || ||||| || Sbjct 33570 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 33629 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||| ||||||||| | || | |||||| ||||| || || Sbjct 33630 AGAGTACGTCCA-TCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33688 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 33689 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33748 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || || || || |||||||| |||||||| Sbjct 33749 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012929658240