Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq135 149 5e-31 seq193 138 8e-28 seq182 104 2e-17 seq57 98.7 7e-16 seq112 95.1 9e-15 seq13 87.8 1e-12 >seq135 Length=816381 Score = 149 bits (164), Expect = 5e-31 Identities = 177/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || ||||| || ||||| ||||||||||| ||| | | | ||||| Sbjct 3781 AACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTC 3722 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || |||||| | || ||||||||||| || |||||| ||||| || || Sbjct 3721 TAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG 3662 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| |||| || ||||| ||| || |||||||||||||| || Sbjct 3661 AATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTCTT 3602 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAAT-TTTAATACTTAT 15390 |||||| |||||||| |||||||| | || ||| |||||| | ||||||| |||| Sbjct 3601 ACCTGTAAGAGTTTTAACAAAAATCT--ATTTTTTTAAATAATTTATTTAATATTTAT 3546 >seq193 Length=296419 Score = 138 bits (152), Expect = 8e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||| ||||| |||||||| || |||||||| ||| | | | || Sbjct 32900 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATC 32959 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| ||||| | || ||||||||||| || |||||| ||||| || || Sbjct 32960 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33019 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || |||| || || || | ||| || ||||| ||||| || Sbjct 33020 TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33079 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | ||| ||||| |||||||||||| Sbjct 33080 TTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33113 Score = 138 bits (152), Expect = 8e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||| ||||| |||||||| || ||||| || ||| | | | || Sbjct 33356 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 33415 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| ||||| | || ||||||||||| || |||||| ||||| || || Sbjct 33416 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33475 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| ||| |||| || || || | ||| || ||||| ||||| || Sbjct 33476 TTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33535 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | ||| ||||| |||||||||||| Sbjct 33536 TTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33569 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||| || || |||||||| || ||||| || ||| | | | || Sbjct 32672 TAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 32731 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| ||||| | || ||||||||||| || |||||| ||||| || || Sbjct 32732 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 32791 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || |||| || || || | ||| || ||||| ||||| || Sbjct 32792 TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 32851 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | |||||| ||||||||||||||| Sbjct 32852 TTTACCAGTTAAAGTTTTAACAAAAATTTGCATA 32885 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||| || || |||||||| || ||||| || ||| | | | || Sbjct 33128 TAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 33187 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||||||||| ||||| | || ||||||||||| || |||||| ||||| || || Sbjct 33188 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33247 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| ||| |||| || || || | ||| || ||||| ||||| || Sbjct 33248 TTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33307 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || | ||| ||||| |||||||||||| Sbjct 33308 TTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33341 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| ||||| ||||| |||||||| || ||||| || ||| | | | || Sbjct 33584 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 33643 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||||||| || ||||| | || ||||||||||| || |||||| ||||| || || Sbjct 33644 TTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33703 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || |||| || || || | ||| || ||||| ||||| || Sbjct 33704 TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33763 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 |||||| || | ||| ||||| ||||||||||| ||||| Sbjct 33764 TTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTTTGA 33802 >seq182 Length=390966 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| |||||||| || || | | | ||||||||||| Sbjct 118206 TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCTAATTGC 118265 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | || | |||||||||||| |||||| ||||| || || || || Sbjct 118266 TTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTA 118325 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| |||| || || ||| ||| || || | ||||||||| ||||| || Sbjct 118326 GCT-TTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGT 118384 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || |||||||| Sbjct 118385 AAGGGTTTTGACGAAGATTTGCAT 118408 >seq57 Length=911805 Score = 98.7 bits (108), Expect = 7e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||| ||| ||| | | |||||||||||| || |||||| | || Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 ||||||||||| || |||||| ||||| || || || ||| |||||||| | | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 ||| | ||| | ||| || || | ||| || || || || || || || ||||||||| Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 15356 AT 15357 || Sbjct 75635 AT 75636 >seq112 Length=1961624 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||| || ||| |||| ||||||||||||||| || ||| | || Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 |||||||||||||| |||||| ||||| || || ||| ||| |||| ||| | | Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || | ||| | || || || | ||| || || || || || || ||||| || ||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 1853612 Query 15356 AT 15357 || Sbjct 1853611 AT 1853610 >seq13 Length=1075363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||| | || |||||||||||||| ||||||| ||| || || | Sbjct 695813 TAATTGTTTACCAAGAAAAATTAAACGTTGTTGGTCTATTGGAATATTTTCCTTTTCTCG 695872 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| |||| | | ||| || ||||| |||| || | || | ||||| ||||| Sbjct 695873 AATTTTGGTCTTAATATTTTTAATAGTATCATTATTCTCGGCTTCAATAGTAATTGTTTT 695932 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAA 15383 ||| || | |||| | | ||||| | ||| ||| || || || ||||| Sbjct 695933 ACCAGTTAAAGTTCTAATGAAAATATTCAT-TTTTAATGTACAAATTTAA 695981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178175938312