Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq193 109 4e-19 >seq193 Length=296419 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || || || || ||| |||||||||||||| ||||| | ||| |||| Sbjct 32900 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATC 32959 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || |||||||| || ||||| || || ||||| || || | || | |||||| ||||| Sbjct 32960 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33019 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| ||| ||||| | ||| ||| || | | || || || | ||||| || Sbjct 33020 TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33079 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||||||||| || || |||||||| Sbjct 33080 TTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || || || || ||| |||||||||||||| || || | ||| |||| Sbjct 33356 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 33415 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || |||||||| || ||||| || || ||||| || || | || | |||||| ||||| Sbjct 33416 TTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33475 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| ||| ||||| | ||| ||| || | | || || || | ||||| || Sbjct 33476 TTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33535 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||||||||| || || |||||||| Sbjct 33536 TTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| || || | ||| |||| || |||||||| || ||||| Sbjct 32694 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAA 32753 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || | || | |||||| |||||| ||| ||| ||||| | Sbjct 32754 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTT 32813 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||| || | | || || || | ||||| |||||||| |||||||| || ||| Sbjct 32814 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACA 32873 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 32874 AAAATTTGCAT 32884 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| || || | ||| |||| || |||||||| || ||||| Sbjct 33150 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAA 33209 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || | || | |||||| |||||| ||| ||| ||||| | Sbjct 33210 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTT 33269 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||| || | | || || || | ||||| |||||||| ||||||||||| || Sbjct 33270 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACG 33329 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 33330 AAAATTTGCAT 33340 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || || || || ||| |||||||||||||| || || | ||| |||| Sbjct 33584 TAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATC 33643 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || ||||| || || ||||| || || ||||| || || | || | |||||| ||||| Sbjct 33644 TTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 33703 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| ||| ||||| | ||| ||| || | | || || || | ||||| || Sbjct 33704 TTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGT 33763 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||||||||| || || |||||||| Sbjct 33764 TTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776596866336