Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq193 167 5e-36 >seq193 Length=296419 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| |||||||| |||||||| ||||| | || ||||||| |||||| ||| Sbjct 32688 GTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 32747 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | |||||||| || || || ||||| ||||| |||||||||| || Sbjct 32748 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 32807 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || ||| || |||| |||||||| |||||||| | ||| Sbjct 32808 ACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTT 32867 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 32868 TTAACAAAAATTTGCAT 32884 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| |||||||| |||||||| ||||| | || ||||||| |||||| ||| Sbjct 33144 GTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 33203 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | |||||||| || || || ||||| ||||| |||||||||| || Sbjct 33204 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 33263 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || ||| || |||| |||||||| |||||||| | || Sbjct 33264 ACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 33323 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 33324 TTTACGAAAATTTGCAT 33340 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| |||||||| |||||||| ||||| | || ||||||| |||||| ||| Sbjct 33372 GTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 33431 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | |||||||| || || || ||||| ||||| |||||||||| || Sbjct 33432 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 33491 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || ||| || |||| |||||||| |||||||| | || Sbjct 33492 ACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 33551 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 33552 TTTACGAAAATTTGCAT 33568 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| |||||||| |||||||| ||||| | || ||||||| ||| || ||| Sbjct 33600 GTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCA 33659 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | |||||||| || || || ||||| ||||| |||||||||| || Sbjct 33660 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 33719 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || ||| || |||| |||||||| |||||||| | || Sbjct 33720 ACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 33779 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| || || |||||||| Sbjct 33780 TTTACGAAAATTTGCATTTT 33799 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| |||||||| || ||||| ||||| | || ||||||| |||||| ||| Sbjct 32916 GTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 32975 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | |||||||| || || || ||||| ||||| |||||||||| || Sbjct 32976 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 33035 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || ||| || |||| |||||||| |||||||| | || Sbjct 33036 ACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 33095 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 33096 TTTACGAAAATTTGCAT 33112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394977468256