Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq154 168 8e-37 seq1 127 2e-24 seq152 89.7 6e-13 >seq154 Length=675934 Score = 168 bits (186), Expect = 8e-37 Identities = 302/432 (70%), Gaps = 23/432 (5%) Strand=Plus/Minus Query 7062 TGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTAT 7121 ||||||||| |||| ||| | || | |||||| ||||||| || |||||||| | Sbjct 471135 TGGATTCCATGCAGACATGATTATTCTTCTATCTGTTGGATTA-TTAACAATTTTGTCAA 471077 Query 7122 AATTATTTGTAAT-TGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAAT 7180 | || || |||||| | || || ||| ||| | |||||||||| |||||| | Sbjct 471076 TAACATCGCGAAGCTGATCTTTTCCTTGTCCTGTATAGTCTGTATGACAATCTATATATT 471017 Query 7181 TAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT 7240 |||| |||||||| | |||||| | ||||| || || |||||||| |||||||| | || Sbjct 471016 TAGCACCAAAATGACGCCATTGCCAACCATATATTGGTCCTAAATCCCCTTCTTCTCTAT 470957 Query 7241 GATTAAATCCTAATCGATTTA--AATTA--GATTTTGATCCATAAGCATCCCAAATATGT 7296 | ||||| | | || | |||| || || |||| ||||||||||||| Sbjct 470956 TTGTTAATCCAATTTTATCAAGAAATTCACGA----GAACCATTTCCATCCCAAATATGA 470901 Query 7297 ACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCT 7356 | | |||||||||||| || |||| ||| ||| ||| ||||| || | |||| Sbjct 470900 ATATTTTTTTTTGATAATATTTTTGAATCAGTATCACCTCTAATAAACCAAAACAATTCT 470841 Query 7357 TCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGG-GAATGTACTT----- 7410 ||| ||| ||| | |||| | | ||||||| || |||||||| |||| ||| Sbjct 470840 TCTGCTACTCCTCTAAAAAATACTTTTTTTGTTGTTAATAAAGGAAAATGATCTTTCAAA 470781 Query 7411 --AAATCAT-ATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAGTTCTATCA 7467 ||||| | || ||| || ||||||| || |||||||||| |||||||||||| Sbjct 470780 GAAAATCTTAATGGATTTGGT---CCAAATATTGCTCGAGTACCTGTACCAGTTCTATCA 470724 Query 7468 ATT-TTAAGTCT 7478 || |||| ||| Sbjct 470723 TTTCTTAATTCT 470712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 6806 TTAATT-GTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 |||||| |||||| | ||||| ||||||| ||| ||||||| |||||| | | Sbjct 471560 TTAATTTGTTCTTGGAGAGCTTCAATATGATTATTATATATATGAGTATCTCCCATATCA 471501 Query 6865 TGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCA 6924 |||||||| || ||||| || ||| | || ||||||||| |||||||||| | | Sbjct 471500 TGAATAAAAGTTCCAGGTTTAATTCCAATTACGTGGGCAATTAAACATGTTAATAAGGAA 471441 Query 6925 TAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAA 6978 ||| || | ||| || ||||| || ||||| | ||| ||||||||||||| Sbjct 471440 TAACTGGCAATATTGAATGGTACGCCCAATCCAACATCACATGATCTTTGATAA 471387 >seq1 Length=2625575 Score = 127 bits (140), Expect = 2e-24 Identities = 212/301 (70%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| | || | ||||| || || |||||| | ||||||||| || Sbjct 1255267 AAGTTTGAAGACTTAGGTATTGGTGGTCTTGACAAGGAATTTAGTGCCATTTTCAGAAGA 1255326 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGA-AATAATaaaaaaaTTAGGCTGTAAACATAT 164516 ||||| ||||| | | |||| | | ||| | |||| ||||| | | ||| Sbjct 1255327 GCATTCGCTTCACG-TATTTTCCCACCATCAATTGTTGAAAAGTTAGGTATTCAGCATTG 1255385 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| ||||||||| |||| || || ||| ||||| || ||||||||||| || Sbjct 1255386 TAAAGGTATTTTATTATATGGTCCACCAGGTACTGGTAAGACTTTAATGGCTCGTCAAAT 1255445 Query 164577 TGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 || | || | |||||| || || || ||| ||||||||||||| ||| | || || Sbjct 1255446 TGGTAAAA-TGTTAAATGCTCGTGAACCAATAA--TTGTTAATGGTCCAGAAATTTTAAA 1255502 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||||||| ||| | || |||| |||||||||||||| ||| || |||||| |||| Sbjct 1255503 TAAATATGTTGGTCAATCTGAAGAAAATGTTAGAAAGTTATTTGCAGAAGCTGAAAAAGA 1255562 Query 164694 A 164694 | Sbjct 1255563 A 1255563 >seq152 Length=734684 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 19350 CTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTG 19409 ||| ||| || |||| |||||||| || ||| | || ||||||||| || || Sbjct 196577 CTAGAATTCCACAAATGGGTGATAAATTCGCTAGTAGACATGGTCAAAAAGGTACTGTTG 196518 Query 19410 GTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTA 19469 |||||| |||||| ||||||||||| |||||| ||||||| || ||| ||| Sbjct 196517 GTATGACCTATCGTACTGAAGATATGCCATTTACTGCTAATGGTATTACACCAGATATTA 196458 Query 19470 TTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||||| || |||||| ||||| || ||||| Sbjct 196457 TTATTAATCCTCATGCTATTCCATCACGTATGAC 196424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870271971200