Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq193 100 3e-16 seq135 89.7 5e-13 >seq193 Length=296419 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||||||||| ||||| | || || || | ||| | Sbjct 32670 CGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCA 32729 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || |||| ||||| | ||| |||||||| ||||||||||| || Sbjct 32730 TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 32789 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| ||||||| | | |||||||| || || || | || || Sbjct 32790 TCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATA 32849 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | |||||| ||||| || ||||| Sbjct 32850 GTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||| ||||| ||||| | || ||||| | ||| | Sbjct 32898 CGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCA 32957 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || |||| ||||| | ||| |||||||| ||||||||||| || Sbjct 32958 TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 33017 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| ||||||| | | |||||||| || || || | || || Sbjct 33018 TCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATA 33077 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || || || || ||||| Sbjct 33078 GTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||||||||| ||||| | || || || | ||| | Sbjct 33126 CGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCA 33185 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || |||| ||||| | ||| |||||||| ||||||||||| || Sbjct 33186 TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 33245 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| |||||| | | |||||||| || || || | || || Sbjct 33246 TCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATA 33305 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || || || || ||||| Sbjct 33306 GTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||| ||||| ||||| | || || || | ||| | Sbjct 33354 CGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCA 33413 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || |||| ||||| | ||| |||||||| ||||||||||| || Sbjct 33414 TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 33473 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| |||||| | | |||||||| || || || | || || Sbjct 33474 TCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATA 33533 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || || || || ||||| Sbjct 33534 GTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||| ||||| ||||| | || || || | ||| | Sbjct 33582 CGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCA 33641 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | || || || |||| ||||| | ||| |||||||| ||||||||||| || Sbjct 33642 TCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 33701 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| ||||||| | | |||||||| || || || | || || Sbjct 33702 TCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATA 33761 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || || || || ||||| Sbjct 33762 GTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 >seq135 Length=816381 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||||||||| | ||| ||||| | ||| ||| || | Sbjct 3779 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTA 3720 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 || || || | |||||||| | ||| |||||||| ||||||||||| || || | || Sbjct 3719 ATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAA 3660 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || |||||||| | | ||| |||| || || || | || ||||| || | Sbjct 3659 TCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTCTTAC 3600 Query 94980 CAGTAAGAGTTTTCACAAAGATCT 95003 | ||||||||||| ||||| |||| Sbjct 3599 CTGTAAGAGTTTTAACAAAAATCT 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289899955520