Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq193 159 3e-34 seq135 107 2e-18 seq182 102 7e-17 >seq193 Length=296419 Score = 159 bits (176), Expect = 3e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||| || |||||| | || || | ||||| || || ||| Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||| | ||| || || ||||| |||||||| || || Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATTCCACCAGATCA 32994 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||||||||||||| || ||| | |||||||| Sbjct 32993 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAA 32934 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||| || || ||||| Sbjct 32933 TATTCAAAAAGAATCCACTCTTCACTTAGT 32904 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||| || |||||| | || || | ||||| || || ||| Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||| | ||| || || ||||| |||||||| || || Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATTCCACCAGATCA 33450 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||||||||||||| || ||| | || ||||| Sbjct 33449 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAA 33390 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||| || || ||||| Sbjct 33389 TATTCAAAAAGAATCCACTCTTCACTTAGT 33360 Score = 154 bits (170), Expect = 1e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||| || |||||| | || || | ||||| || || ||| Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||| | ||| || || ||||| |||||||| || || Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATTCCACCAGATCA 32766 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||||||||||||| || ||| | || ||||| Sbjct 32765 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAA 32706 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||||||||||||| || || || ||||| || | || | || |||||||| Sbjct 32705 TATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGAAATTA 32652 Score = 154 bits (170), Expect = 1e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || ||||||||||| || |||||| | || || | ||||| || || Sbjct 33800 AAAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATC 33741 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||| || | ||| |||| | ||| || || ||||| |||||||| | Sbjct 33740 TTCTGACACTATTGAAAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATTCCACCAG 33682 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | |||||||| || || ||||||||||||| || ||| | || | Sbjct 33681 ATCAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACT 33622 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||||||| || || ||||| Sbjct 33621 ACAATATTCAAAAAGAATCCACTCTTCACTTAGT 33588 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||| || |||||| | || || | ||||| || || ||| Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||| | ||| || || ||||| |||||||| || || Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATTCCACCAGATCA 33222 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||||||||||||| || ||| | || ||||| Sbjct 33221 ACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAA 33162 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||| || || || ||||| Sbjct 33161 TATTCAAAAAGAATCTACTCTTCACTTAGT 33132 >seq135 Length=816381 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || ||||| || ||| | || ||||| |||| || | ||||| || || ||||| ||| Sbjct 3578 ATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATACT 3637 Query 25065 ATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 || || |||| | || || | ||| || || ||||| |||||||| || ||||| Sbjct 3638 ATTGAAAATGTCA---AGGCTAAGATTCAA-GATAAGGAAGGTATTCCACCAGATCAACA 3693 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || || || || || ||||||||||||| || ||| | |||||||| || Sbjct 3694 ACGTTTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTACAACAT 3753 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| |||||||| || ||| | || || Sbjct 3754 TCAAAAGGAATCCACTCTCCATCTTGTTCT 3783 >seq182 Length=390966 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || ||||| |||| || | || || || || || Sbjct 118408 ATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCC 118349 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| || | || || || ||||| |||||||| || Sbjct 118348 GACACTATTGAAAATGTCA---AAGCTAAGATCCAA-GATAAGGAAGGTATTCCACCAGA 118293 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || |||| || ||||| || ||||||||||||| ||| || | || || Sbjct 118292 CCAACAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGACTA 118233 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || ||||| ||||| || || || Sbjct 118232 CAACATCCAAAAGGAATCTACCCTTCA 118206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326774765080