Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq193 163 2e-35 seq182 145 6e-30 seq135 140 3e-28 seq57 107 2e-18 seq112 98.7 8e-16 >seq193 Length=296419 Score = 163 bits (180), Expect = 2e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||||||||| |||||||| | ||| | ||||| ||| | | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| |||||||| ||||| ||||||||||| |||||| Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||||||||| || | || ||||| || || Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 32670 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| |||||||| | ||| | ||||| ||| | | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| |||||||| ||||| ||||||||||| |||||| Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| ||| || || | || |||||||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || ||||| || || | || || ||| Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGT 32885 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| |||||||| | ||| | ||||| ||| | | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| |||||||| ||||| ||||||||||| |||||| Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || ||||| || || | || || ||| Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGT 33341 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| |||||||| | ||| | ||||| ||| | | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| |||||||| ||||| ||||||||||| |||||| Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | || ||||| || || | || || ||| Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGT 33113 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||||||||| || || |||||||| |||||||| | ||| | ||||| ||| | Sbjct 33800 AAAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATC 33741 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || | |||| ||| |||||||| ||||| ||||||||||| || Sbjct 33740 TTCTGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGA 33681 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||| || || || ||||| ||| || || | || || || Sbjct 33680 TCAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTA 33621 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| ||||||||||||||||| | || ||||| || || | || || ||| Sbjct 33620 CAATATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGGT 33569 >seq182 Length=390966 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || ||||| | || ||||| || | || ||||| || ||| || Sbjct 118410 AGATGCAAATCTTCGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCT 118351 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| || | || || ||||| || || ||||| ||||| ||||||||||| || | Sbjct 118350 CCGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACC 118291 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||||||||||| || ||||| || || ||||| ||| || ||| | || || |||| Sbjct 118290 AACAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGACTACA 118231 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| ||||| ||||| ||| | || | ||| | || || || || ||| Sbjct 118230 ACATCCAAAAGGAATCTACCCTTCACCTTGTTCTTCGTTTACGTGGTGGT 118181 >seq135 Length=816381 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 ||||||||||||||| | || ||||| || | || | ||||| ||| | | ||||| Sbjct 3578 ATTTTTGTTAAAACTCTTACAGGTAAGACCATTACCTTAGAAGTTGAATCATCTGATACT 3637 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | || || |||| || |||||||| ||||| ||||||||||| |||||||||||| Sbjct 3638 ATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAACGT 3697 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 | || || || || || || ||||| ||| || || | || ||||||||||||||| Sbjct 3698 TTAATCTTCGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTACAACATTCAA 3757 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| | ||| | ||| | || || || || ||| Sbjct 3758 AAGGAATCCACTCTCCATCTTGTTCTTCGTTTACGTGGTGGT 3799 >seq57 Length=911805 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 |||||||| || || | ||||| || || |||| ||||| || ||| | |||| | | Sbjct 75636 ATTTTTGTAAAGACCCTTACCGGAAAGACTATCACCCTTGAGGTTGAATCTTCCGACAGC 75577 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | | || | || | || || ||||| ||||| ||||||||||| |||||||||||| Sbjct 75576 ATTGTTAATGTAAAGAACAAGATCCAAGAAAAGGAAGGTATTCCACCAGATCAACAACGT 75517 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 | || || || || || || ||||| || |||| || | ||||| |||||||| ||| Sbjct 75516 TTAATCTTCGCTGGTAAGCAATTAGAAGACAACCGTACTCTTTCCGACTACAACATCCAA 75457 Query 22405 AA 22406 || Sbjct 75456 AA 75455 >seq112 Length=1961624 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 ||||| || ||||| | || || || || | || ||||| || || | |||| | Sbjct 1853610 ATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCGACAGT 1853669 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | | | || | || | || |||||||| ||||| ||||||||||| || ||||||||| Sbjct 1853670 ATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAACAACGT 1853729 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 | || || ||||| ||||| ||||| || || | || | || || |||||||||||| Sbjct 1853730 TTAATCTTCGCCGGTAAACAATTAGAAGACAACAGAACTCTTTCTGACTACAACATTCAA 1853789 Query 22405 AA 22406 || Sbjct 1853790 AA 1853791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726813219080