Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq193 109 4e-19 >seq193 Length=296419 Score = 109 bits (120), Expect = 4e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| ||||| || ||||| ||||| | ||| ||| | | Sbjct 32884 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 32825 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||| ||| ||||| || ||| | || | | ||| Sbjct 32824 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32765 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || |||||||| |||||| |||||||| | ||| | | || |||||| Sbjct 32764 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 32705 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 ||||| || |||||||||||||| | || |||||| | || || ||| ||||| || || Sbjct 32704 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGAAATTAAAAAAAA 32645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||| || ||||| ||||| | ||| ||| | | Sbjct 33340 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33281 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| ||||| || ||| | || | | ||| Sbjct 33280 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33221 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || |||||||| |||||| |||||||| | ||| | | || |||||| Sbjct 33220 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33161 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || |||||||||||||| | || |||||| | || || || Sbjct 33160 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33114 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||| || ||||| ||||| | ||| ||| | | Sbjct 33112 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33053 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||| ||| ||||| || ||| | || | | ||| Sbjct 33052 GACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 32993 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || |||||||| |||||| |||||||| | ||| | | ||||||||| Sbjct 32992 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAT 32933 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| |||||||| | || |||||| | || || || Sbjct 32932 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 32886 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||| || ||||| ||||| | ||| ||| | | Sbjct 33568 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 33509 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| ||||| || ||| | || | | ||| Sbjct 33508 GACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 33449 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || |||||||| |||||| |||||||| | ||| | | || |||||| Sbjct 33448 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 33389 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| |||||||| | || |||||| | || || || Sbjct 33388 ATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33342 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| || | || || ||||| || ||||| ||||| | ||| ||| | Sbjct 33799 AAAATGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCT 33740 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | | ||| ||| ||| ||||| || ||| | || | | Sbjct 33739 TCTGACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGAT 33680 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | || |||||||| || ||| |||||||| | ||| | | || ||| Sbjct 33679 CAACAACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTAC 33620 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||| |||||||| | || |||||| | || || || Sbjct 33619 AATATTCAAAAAGAATCCACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 33570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123787402128