Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq193 127 2e-24 seq135 120 3e-22 seq57 102 7e-17 >seq193 Length=296419 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||||| || | || |||||||||||||| |||||||| Sbjct 32883 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCA 32942 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||||||| | || | ||| ||||| || || Sbjct 32943 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33002 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | ||||| ||||| | ||||| Sbjct 33003 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33062 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| ||||| ||||| ||||| Sbjct 33063 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||||| || | ||||||||||||||||| ||||| || Sbjct 33111 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 33170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||||||| | || | ||| ||||| || || Sbjct 33171 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33230 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | ||||| ||||| | ||||| Sbjct 33231 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| ||||| ||||| ||||| Sbjct 33291 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || ||||| || | ||||||||||||||||| ||||| || Sbjct 32658 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 32717 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| | |||||||||||| | || | ||| ||||| || || ||| Sbjct 32718 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 32777 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||||| || | | ||||| ||||| | ||||| || Sbjct 32778 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACT 32837 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || | |||||| |||||||| ||||| Sbjct 32838 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||||| || | || |||||||||||||| ||||| || Sbjct 33339 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33398 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||||||| | || | ||| ||||| || || Sbjct 33399 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33458 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | ||||| ||||| | ||||| Sbjct 33459 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33518 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| ||||| ||||| ||||| Sbjct 33519 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||||| || | || |||||||||||||| ||||| || Sbjct 33567 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33626 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||| |||||||| | || | ||| ||||| || || Sbjct 33627 GAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33686 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | ||||| ||||| | ||||| Sbjct 33687 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33746 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| ||||| ||||| ||||| Sbjct 33747 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 >seq135 Length=816381 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||||| | | ||| | ||| | || ||||| ||||||||||||||||| Sbjct 3799 ACCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 3740 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| | ||| ||||||||| |||| | ||| ||||| || || || Sbjct 3739 AAGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 3680 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||||| || | | ||||| || || | ||||| || Sbjct 3679 AATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAAC 3620 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 114378 || | ||| | || || || || |||||||| |||||||||| Sbjct 3619 TTCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT 3576 >seq57 Length=911805 Score = 102 bits (112), Expect = 7e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 ||||| |||||||| ||| | |||||| ||||| | ||| ||||||||| |||| Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | ||| ||||| || || ||||| ||||| || || ||||| | |||| | || Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | | |||||| ||||| || || | ||| | || || ||||| || || ||||||||| Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 114375 ATCT 114378 |||| Sbjct 75635 ATCT 75638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133212069984