Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq182 134 3e-26 seq193 122 2e-22 seq135 122 2e-22 seq57 93.3 1e-13 >seq182 Length=390966 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || || |||| || ||| |||||||| || ||||| | Sbjct 118182 CCACCACGTAAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAA 118241 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||||||| || || |||||||| ||||| ||||| ||| Sbjct 118242 AGGGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGA 118301 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || ||||| || ||||| |||| ||| ||||| || Sbjct 118302 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 118361 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || || |||||||| || ||||| Sbjct 118362 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq193 Length=296419 Score = 122 bits (134), Expect = 2e-22 Identities = 185/260 (71%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || | |||| ||| ||||||||| ||||| ||||| | Sbjct 33570 CCACCACGAAGACGTAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGA 33628 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||||||||| || || || || || | ||| |||||| ||| Sbjct 33629 AAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33688 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| || || || | || |||||||| |||| || ||||| || Sbjct 33689 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33748 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT---GTTATT 288482 ||| | || || || || || || | |||||| ||||| || |||||| | |||||| Sbjct 33749 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTTTGAGTTATT 33808 Query 288483 CTA----ATATTTTTAATAA 288498 || |||| ||||||| Sbjct 33809 TTATAATATATGCTTAATAA 33828 Score = 116 bits (128), Expect = 9e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || | |||| ||| ||||||||| ||||| || || | Sbjct 32886 CCACCACGAAGACGTAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGA 32944 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| |||||||||||||| || || || || | ||| |||||| ||| Sbjct 32945 AAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33004 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| || || || | || |||||||| |||| || ||||| || Sbjct 33005 AATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAAC 33064 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || || | |||||| ||||| || ||||| Sbjct 33065 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 116 bits (128), Expect = 9e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || || | |||| || | |||| ||| ||||||||| ||||| ||||| | Sbjct 33342 CCACCACGAAGACGTAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGA 33400 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| |||||||||||||| || || || || | ||| |||||| ||| Sbjct 33401 AAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 33460 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| || || || | || || ||||| |||| || ||||| || Sbjct 33461 AATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAAC 33520 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || || | |||||| ||||| || ||||| Sbjct 33521 TTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| ||||| | || || ||||| |||||||||||||| || || || Sbjct 33149 TTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAA 33208 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| ||| || ||||| ||||| || || || | || || || Sbjct 33209 AATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACATT 33268 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| || ||||| ||||| | || || || || || || | |||||| || Sbjct 33269 TTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTAC 33328 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 33329 GAAAATTTGCAT 33340 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 || |||||| || || | |||| || | |||| || ||||||||| ||||| |||| Sbjct 32654 ATTTCCACCACGAAGACGTAAG-ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGT 32712 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || ||||| |||||||||||||| || || || || | ||| |||||| Sbjct 32713 CAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTG 32772 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| ||||| || || || | || |||||||| |||| || |||| Sbjct 32773 GTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATT 32832 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | || || || || || || | ||| || || || || ||||| Sbjct 32833 CAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 >seq135 Length=816381 Score = 122 bits (134), Expect = 2e-22 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | ||| ||| ||||| || || || || | Sbjct 3798 CCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 3739 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||||||||| || || |||||||| | ||| |||||| ||| Sbjct 3738 AGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 3679 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || || || || || || ||||| |||| ||| ||||| ||| Sbjct 3678 ATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACT 3619 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486 || | || || ||||| || || ||||| || || || |||| ||| | ||| ||| Sbjct 3618 TCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT--ATTTTTTTA-AATAA 3562 Query 288487 TATTTTTAATA 288497 | | ||||||| Sbjct 3561 TTTATTTAATA 3551 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 72438 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 72497 ||||||||||| |||||||| ||||| | ||||| || || |||||||| || || Sbjct 662289 TATGGAAAAGTTCAAGAAATACCTCAAAATGAAAAAACACCATTTTATCCACGTTCACCC 662348 Query 72498 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 72557 || |||||||| || || || || |||||||| | || || ||||| | ||||| Sbjct 662349 TATGGTGTTGCTAAATTATATGCCTATTGGATTGTTGTTAACTATCGTGAAGCTTATAAT 662408 Query 72558 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 72607 |||| || || || || | || ||||| || ||||| | ||||| Sbjct 662409 ATGTTTGCTTGTAATGGTATATTATTTAATCATGAAAGTCCAAGAAGAGG 662458 >seq57 Length=911805 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||||| || || || |||||||||||| || || |||||||| Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| ||| || ||||| || || ||||| || || || || | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| ||||| || || || ||||| ||||| ||||| || ||||| || || Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 288466 ATCT 288469 |||| Sbjct 75635 ATCT 75638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650893477296