Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq158 91.5 3e-13 seq135 86.0 1e-11 >seq158 Length=610027 Score = 91.5 bits (100), Expect = 3e-13 Identities = 309/475 (65%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 297248 TCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCA 297307 ||| |||||||| || | || ||| | || |||| ||||| || || | |||| Sbjct 600252 TCTCTTGGATTGAAATTTGGAATACTGGTACTATAACCTGTACCAATACCTTCTGCACCA 600311 Query 297308 TTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCA 297367 || | |||| | || | || || | ||| | | |||||| ||| | | ||| ||| Sbjct 600312 TTAATAAGAACCATAGGTAAAATGGGAATATACCATTTTGGTTCAATCATTTGACCATCA 600371 Query 297368 TCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGT--CTGAG 297425 |||| | ||||| | | |||||| || | | ||||| || || || Sbjct 600372 TCATTTAAATATTCAATGATATTATCATCTGATTTCTTGAAAATTAATCTAGCAACTTTA 600431 Query 297426 GGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCG 297485 | | | || ||||||||||| || ||||| || |||||||||||| || || | | Sbjct 600432 GCT--AATTGAGTGAAAATATAACGAGCACTAGCAGCATCCTTACCACCTTGTAAACGTG 600489 Query 297486 AACCGAACTGGCCCTCCGGCAACAACCAGTTGATG-TTATTGCTTCCGACATAATCCTGT 297544 |||||| || || | || ||| | || | || ||||| || || ||| |||| || Sbjct 600490 TACCGAATTGACCATTTGG-AACTAACAATGGAACATTATTACTACCAACAAAATCTTGA 600548 Query 297545 GCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCT 297604 || | || || || | ||| | ||| ||||| || ||||| |||| || Sbjct 600549 GCTAAATTAACAATAGCAAGAGAAAGACTTTGTTCACCATGATGGTAGGCTGTATGTTCA 600608 Query 297605 GCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAG-- 297662 |||| ||||| | | || |||||||| | || | || ||||| | |||||| Sbjct 600609 GCAATATAACCAGTAAGTTGGGCAACCTTAATTTCATTGGTTAAATTTCTTTTGAAACAA 600668 Query 297663 CTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 ||| | ||| | ||| | |||| |||||| ||||||||||| | || ||||| Sbjct 600669 CTGTACATA--ATTTTTCTTTGACCAGGTTTAAAACCATCAACTAAGGATGGAAT 600721 >seq135 Length=816381 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 68427 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 68486 ||||||||||| |||||||| ||||| | ||||| || || |||||||| || || Sbjct 662289 TATGGAAAAGTTCAAGAAATACCTCAAAATGAAAAAACACCATTTTATCCACGTTCACCC 662348 Query 68487 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 68546 || |||||||| || || || || |||||||| | || || ||||| | ||||| Sbjct 662349 TATGGTGTTGCTAAATTATATGCCTATTGGATTGTTGTTAACTATCGTGAAGCTTATAAT 662408 Query 68547 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 68596 |||| || || || || | || ||||| || ||||| | ||||| Sbjct 662409 ATGTTTGCTTGTAATGGTATATTATTTAATCATGAAAGTCCAAGAAGAGG 662458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876721689200