Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq193 109 5e-19 seq135 95.1 1e-14 >seq193 Length=296419 Score = 109 bits (120), Expect = 5e-19 Identities = 155/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| |||| || |||||||||||||| ||||| || | | || || | | Sbjct 33584 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33642 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | ||||| || ||| |||| | || || || || || ||||| ||||| || | Sbjct 33643 CTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33702 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||| || || | || ||| | || ||||||| ||| | | Sbjct 33703 CTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33762 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || || || ||||| |||||||||||||||||||| Sbjct 33763 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| |||| || |||||||||||||| |||||||| | | || || | | Sbjct 32900 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCAT 32958 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | || || || ||| |||| | || || || || || ||||| ||||| || | Sbjct 32959 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33018 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||| || || | || ||| | || ||||||| ||| | | Sbjct 33019 CTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33078 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || ||||| ||||||||||||||||| Sbjct 33079 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| |||| || |||||||||||||| ||||| || | | || || | | Sbjct 33128 TAAG-ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33186 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | || || || ||| |||| | || || || || || ||||| ||||| || | Sbjct 33187 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33246 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||| ||| || | || ||| | || ||||||| ||| | | Sbjct 33247 CTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33306 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || ||||| ||||||||||||||||| Sbjct 33307 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| |||| || |||||||||||||| ||||| || | | || || | | Sbjct 33356 TAAG-ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 33414 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | || || || ||| |||| | || || || || || ||||| ||||| || | Sbjct 33415 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 33474 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||| ||| || | || ||| | || ||||||| ||| | | Sbjct 33475 CTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 33534 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || ||||| ||||||||||||||||| Sbjct 33535 TTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| |||| |||| || |||||||||||||| ||||| || | | || || | | Sbjct 32672 TAAG-ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCAT 32730 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | || || || ||| |||| | || || || || || ||||| ||||| || | Sbjct 32731 CTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTAT 32790 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || ||| ||| || || | || ||| | || ||||||| ||| | | Sbjct 32791 CTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAG 32850 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || |||||||| || ||||||||||| Sbjct 32851 TTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 >seq135 Length=816381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | ||| || ||||| | || ||||| ||||||||||||||||| | Sbjct 3799 ACCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 3740 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||| || || | || | || || || || || || Sbjct 3739 AAGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 3680 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| ||| || | |||||| | || || Sbjct 3679 AATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAAC 3620 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT--AATAAT 64452 ||||| || | |||||| || || | |||||| || ||||| | |||| |||||| Sbjct 3619 TTCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCTATTTTTTTAAATAAT 3561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643351030080