Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq135 152 4e-32 seq193 141 7e-29 seq182 116 3e-21 seq112 95.1 9e-15 seq57 89.7 4e-13 >seq135 Length=816381 Score = 152 bits (168), Expect = 4e-32 Identities = 187/254 (74%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| | ||| || || || || ||||| ||||||||||| Sbjct 3798 CCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 3739 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||||||| || |||||| | || ||||| ||||| || |||| Sbjct 3738 AGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 3679 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || ||| |||| |||||||| ||| || Sbjct 3678 ATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACT 3619 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 |||||||||||||| |||||||| |||||||| |||||||| | | ||| |||||| | Sbjct 3618 TCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT-ATTTTTTTAAATAATT 3560 Query 15190 TTTTTAATACTTAT 15203 | ||||||| |||| Sbjct 3559 TATTTAATATTTAT 3546 >seq193 Length=296419 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| ||||| |||||||| || ||||| || Sbjct 32658 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 32717 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | || ||||| ||||| || |||| Sbjct 32718 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 32777 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || || |||| ||||| || | ||| || Sbjct 32778 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACT 32837 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| |||||||| || | |||||| ||||||||||||||| Sbjct 32838 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCATA 32885 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| ||||| |||||||| || ||||| || Sbjct 33114 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 33173 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | || ||||| ||||| || |||| Sbjct 33174 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 33233 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || ||| |||| ||||| || | ||| || Sbjct 33234 ATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACT 33293 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| |||||||| || | ||| ||||| |||||||||||| Sbjct 33294 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33341 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| || || |||||||| || |||||||| Sbjct 32886 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAA 32945 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | || ||||| ||||| || |||| Sbjct 32946 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 33005 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || || |||| ||||| || | ||| || Sbjct 33006 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACT 33065 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| |||||||| || | ||| ||||| |||||||||||| Sbjct 33066 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33113 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| || || |||||||| || ||||| || Sbjct 33342 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 33401 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | || ||||| ||||| || |||| Sbjct 33402 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 33461 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || ||| |||| ||||| || | ||| || Sbjct 33462 ATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACT 33521 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| |||||||| || | ||| ||||| |||||||||||| Sbjct 33522 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATA 33569 Score = 136 bits (150), Expect = 3e-27 Identities = 180/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| ||||| ||||| || || |||||||| || ||||| || Sbjct 33570 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAA 33629 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||||||| || ||||| | || ||||| ||||| || |||| Sbjct 33630 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 33689 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || || |||| ||||| || | ||| || Sbjct 33690 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACT 33749 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 ||||| ||||| |||||||| || | ||| ||||| ||||||||||| ||||| | || Sbjct 33750 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTTTGAGTT--AT 33807 Query 15190 TTTTTAATA 15198 ||| ||||| Sbjct 33808 TTTATAATA 33816 >seq182 Length=390966 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| | ||||||||||| || ||||| |||||||| || Sbjct 118182 CCACCACGTAAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAA 118241 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||||||||| || || ||| | || | ||| |||||||| |||| Sbjct 118242 AGGGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGA 118301 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || ||| ||| |||| ||||| ||| ||| || Sbjct 118302 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 118361 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| ||||| || || ||||| || || |||||||| Sbjct 118362 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq112 Length=1961624 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 ||||| |||||||| || ||| |||| ||||||||||||||| || ||| | || Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 ||||| |||||||| |||||| |||||||| || ||| ||| | || ||| | | Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 ||| | ||| | || || || | ||| || || || || || || ||||| || ||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 1853612 Query 15169 AT 15170 || Sbjct 1853611 AT 1853610 >seq57 Length=911805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 ||||| |||||||| ||| ||| | | |||||||||||| || |||||| | || Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 ||||| ||||| || |||||| |||||||| || || ||| | |||||| | | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 || | ||| | ||| || || | ||| || || || || || || || ||||||||| Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 15169 AT 15170 || Sbjct 75635 AT 75636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390989474120