Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq193 123 2e-23 seq182 105 6e-18 seq135 91.5 1e-13 >seq193 Length=296419 Score = 123 bits (136), Expect = 2e-23 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 45103 TTTATTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGAT 45160 ||| ||||| |||| || || || | || |||| || || || ||||| ||||| || Sbjct 32645 TTTTTTTTAATTTCCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAAT 32704 Query 45161 ATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTG 45220 ||| || || | || ||| || |||||||| || || | || || ||||| Sbjct 32705 ATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTG 32764 Query 45221 CTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTC 45280 || || || ||||| ||||| ||||||||||| ||| |||| ||| | ||||| Sbjct 32765 TTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTC 32824 Query 45281 GGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| | ||||| ||||| || |||| |||||| |||||||||||||| Sbjct 32825 AGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| ||||| ||||| ||||| Sbjct 32883 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCA 32942 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || |||||||| || || | || || ||||| || || || Sbjct 32943 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33002 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| |||| ||| | ||||| ||||| || Sbjct 33003 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33062 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || |||| ||| ||||| ||||||||||| Sbjct 33063 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| ||||| ||||| || || Sbjct 33111 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 33170 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || |||||||| || || | || || ||||| || || || Sbjct 33171 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33230 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| |||| ||| | ||||| ||||| || Sbjct 33231 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33290 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || |||| ||| ||||| ||||||||||| Sbjct 33291 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| ||||| ||||| || || Sbjct 33339 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33398 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || |||||||| || || | || || ||||| || || || Sbjct 33399 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33458 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| |||| ||| | ||||| ||||| || Sbjct 33459 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33518 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || |||| ||| ||||| ||||||||||| Sbjct 33519 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| || || || ||||| ||||| ||||| || || Sbjct 33567 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33626 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || ||||| || || || | || || ||||| || || || Sbjct 33627 GAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33686 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| ||| |||| ||| | ||||| ||||| || Sbjct 33687 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33746 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || |||| ||| ||||| ||||||||||| Sbjct 33747 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 >seq182 Length=390966 Score = 105 bits (116), Expect = 6e-18 Identities = 172/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||||||||| || || || | ||| | ||| || Sbjct 118200 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTCT 118259 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 118260 AATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGG 118319 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| ||| | |||||||| || || || || || |||| || || Sbjct 118320 ATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTTA 118379 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC-GCGACCAAT---TTAATAATTTAACTC 45367 || || || ||||| || || ||||||||| | | || ||| |||| || ||| || Sbjct 118380 CCCGTAAGGGTTTTGACGAAGATTTGCATCTCAACTACTAATTAATTAAATATATAATTC 118439 Query 45368 TTATTT 45373 | |||| Sbjct 118440 TCATTT 118445 >seq135 Length=816381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||| || || ||||| | || ||| || Sbjct 3780 ACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCT 3721 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 3720 AATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 3661 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | || || || || || ||||| | |||| || || Sbjct 3660 ATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTCTTA 3601 Query 45312 CCGGTTAGAGTTTTTACAAAAAT 45334 || || |||||||| |||||||| Sbjct 3600 CCTGTAAGAGTTTTAACAAAAAT 3578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001889190720