Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq180 100 3e-16 seq209 98.7 1e-15 seq154 96.9 4e-15 seq44 95.1 1e-14 seq175 93.3 4e-14 seq164 91.5 2e-13 seq57 91.5 2e-13 seq1 86.0 7e-12 >seq180 Length=401682 Score = 100 bits (110), Expect = 3e-16 Identities = 151/209 (72%), Gaps = 17/209 (8%) Strand=Plus/Plus Query 61970 TTGATATCTTCAATTGACATTACAT--TTCCTTGGTGAAAGTACGTGCAATAACGTCACG 62027 || |||| || |||||| |||||| || | ||| || ||||| |||||||| || Sbjct 30823 TTTATATTTTGAATTGAT-TTACATCTTTTCATGG--AAGGTACGAGCAATAACTTCCTT 30879 Query 62028 CTGCTGTTCTGACGTCAGAGAATT---AAATCGGACAGCATAACCAGAAACACGAATAGT 62084 || |||| || || | | || ||| ||||||||| ||||||||||||||||| Sbjct 30880 TTGTTGTTGTGGTGTTA---ATTTTACAAAATTGACAGCATATCCAGAAACACGAATAGT 30936 Query 62085 CAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTCTAAAGTTTC---TTTAGTCAG 62141 | | ||||| ||||||||||| | ||||||||||| ||||| |||| || Sbjct 30937 TAAGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCTAAGGTTTCACGTTTA---AG 30993 Query 62142 AACATTCACGTTCAGATGTTGGCCACCTT 62170 |||||| || || ||||| ||| |||||| Sbjct 30994 AACATTAACATTAAGATGATGGGCACCTT 31022 >seq209 Length=215784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAG-AATTAAATCGGACAG 62062 ||| ||||| |||||||| || | || |||| || || || ||| |||| | |||| Sbjct 164137 GAAGGTACGAGCAATAACTTCTCTTTGTTGTTGTGGAGTAAGTCTAATGAAAT-GAACAG 164079 Query 62063 CATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTT 62122 ||||||||||||||||||| || | | ||||| |||||||||||| | ||||||| Sbjct 164078 CATAACCAGAAACACGAATGGTTAAGTTTGGATAGTTTTCTGGATGTACCATAGCATCTT 164019 Query 62123 CTAAAGTTTCTTTAGTCAGAACATTCACGTT 62153 ||||||| | ||| | | ||||| ||||| Sbjct 164018 CTAAAGTAGCCTTATTTAATACATTAACGTT 163988 >seq154 Length=675934 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/174 (74%), Gaps = 13/174 (7%) Strand=Plus/Plus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATT---AAATCGGAC 62060 ||| ||||| |||||||| || ||||||| || || | | || ||| ||| Sbjct 318348 GAAGGTACGAGCAATAACTTCTTTTTGCTGTTGTGGAGTTA---ATTTTACAAAATTGAC 318404 Query 62061 AGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATC 62120 ||||||||| |||||||||||||| || | ||||| ||||||||||| | ||||| Sbjct 318405 AGCATAACCGGAAACACGAATAGTAAGGTTTGGATAATTTTCTGGATGAACCATAGCATC 318464 Query 62121 TTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTG-GCCACCTT 62170 ||||| ||||| |||| |||||||| ||||| ||||| || ||| |||| Sbjct 318465 TTCTAGGGTTTCACGTTTA---AGAACATTAACGTTAAGATGATGAGCCCCCTT 318515 >seq44 Length=28038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| |||||||||||||| || || |||| || || | | ||| |||||| Sbjct 4825 GAATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGC 4766 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||| ||||| || |||||||| || | ||||| ||||||||||| | |||||||| Sbjct 4765 ATATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 4706 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTT 62170 ||| |||||| | |||||||| || || ||||| ||| | |||| Sbjct 4705 TAATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCTT 4659 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| |||||||||||||| || || |||| || || | | ||| |||||| Sbjct 5461 GAATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGC 5520 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||| ||||| || |||||||| || | ||||| ||||||||||| | |||||||| Sbjct 5521 ATATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 5580 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTT 62170 ||| |||||| | |||||||| || || ||||| ||| | |||| Sbjct 5581 TAATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCTT 5627 >seq175 Length=448337 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| |||||||||||||| || || |||| || || | | ||| |||||| Sbjct 128720 GAATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGC 128661 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||| ||||| || |||||||| || | ||||| ||||||||||| | |||||||| Sbjct 128660 ATATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 128601 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATG-TTGGCCACCTT 62170 ||| |||||| | |||||||| || || ||||| | |||| |||| Sbjct 128600 TAATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCCTT 128553 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| |||||||||||||| || || |||| || || | | ||| |||||| Sbjct 148865 GAATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGC 148924 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||| ||||| || |||||||| || | ||||| ||||||||||| | |||||||| Sbjct 148925 ATATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 148984 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATG-TTGGCCACCTT 62170 ||| |||||| | |||||||| || || ||||| | |||| |||| Sbjct 148985 TAATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCCTT 149032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| |||||||||||||| || || |||| || || | | ||| |||||| Sbjct 155183 GAATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGC 155124 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||| ||||| || |||||||| || | ||||| ||||||||||| | |||||||| Sbjct 155123 ATATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 155064 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATG-TTGGCCACCTT 62170 ||| |||||| | |||||||| || || ||||| | |||| |||| Sbjct 155063 TAATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCCTT 155016 >seq164 Length=541120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/208 (72%), Gaps = 15/208 (7%) Strand=Plus/Plus Query 61970 TTGATATCTTCAATTGACATTACATTTCCTTGGTGAAAG-TACGTGCAATAACGTCACGC 62028 || |||| || |||||| |||||| | || || ||| |||| |||||||| || Sbjct 5114 TTTATATTTTGAATTGAT-TTACATCTT-TTCATGGAAGATACGAGCAATAACTTCCTTT 5171 Query 62029 TGCTGTTCTGACGTCAGAGAATT---AAATCGGACAGCATAACCAGAAACACGAATAGTC 62085 || |||| || || | | || ||| ||||||||| |||||||||||||| || Sbjct 5172 TGTTGTTGTGGTGTTA---ATTTTACAAAATTGACAGCATATCCAGAAACACGAATGGTT 5228 Query 62086 AGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTCTAAAGTTTC---TTTAGTCAGA 62142 | | ||||| ||||||||||| | ||||||||||| ||||| |||| ||| Sbjct 5229 AAGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCTAAGGTTTCACGTTTA---AGA 5285 Query 62143 ACATTCACGTTCAGATGTTGGCCACCTT 62170 ||||| || || ||||| ||| |||||| Sbjct 5286 ACATTAACATTAAGATGATGGGCACCTT 5313 >seq57 Length=911805 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 |||||||||||||||||||||||||| || | ||||| ||||||||||| | ||| Sbjct 6129 ACAGCATAACCAGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATAGCA 6188 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 |||||||| ||||| | |||||||| || || ||||| || |||| Sbjct 6189 TCTTCTAAGGTTTCACGCTTAAGAACATTAACATTAAGATGATGAGCACC 6238 >seq1 Length=2625575 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 |||||||||||||||||||||||||| || | ||||| |||||||||||| | ||| Sbjct 624147 ACAGCATAACCAGAAACACGAATAGTAAGATTTGGATAATTTTCTGGATGTGCCATAGCA 624088 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 || || | |||||| | || ||||| ||||| ||||| || |||| Sbjct 624087 TCCTCAAGAGTTTCACGCTTGAGGACATTAACGTTAAGATGGTGAGCACC 624038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529598464160000