Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq209 104 4e-17 seq44 84.2 3e-11 >seq209 Length=215784 Score = 104 bits (114), Expect = 4e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAG-AATTAAATCTAACGGC 28046 || ||||||| || ||| || | |||||||| ||| || || ||| |||| ||| || Sbjct 164136 AAGGTACGAGCAATAACTTCTCTTTGTTGTTGTGGAGTAAGTCTAATGAAATG-AACAGC 164078 Query 28047 ATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTC 28106 ||||||||| || ||||| || || | ||| || ||||||||| | || |||||||| Sbjct 164077 ATAACCAGAAACACGAATGGTTAAGTTTGGATAGTTTTCTGGATGTACCATAGCATCTTC 164018 Query 28107 TAAAGTTTCTTTATTCAAGACATTTACATTTAAATG 28142 |||||| | ||||| || ||||| || ||||| || Sbjct 164017 TAAAGTAGCCTTATTTAATACATTAACGTTTAAGTG 163982 >seq44 Length=28038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACGGCA 28047 || ||||| | || ||| || |||||||| ||| |||| | ||| | || ||| Sbjct 4824 AATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGCA 4765 Query 28048 TAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTCT 28107 || |||||||||||||| || | | ||| || ||||||||| || ||||||||| Sbjct 4764 TATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCT 4705 Query 28108 AAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACCCCCTT 28153 || |||||| || | ||||| ||||| | ||| || |||||| Sbjct 4704 AATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCTT 4659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACGGCA 28047 || ||||| | || ||| || |||||||| ||| |||| | ||| | || ||| Sbjct 5462 AATGTACGTGCAATAACTTCTTTTTGTTGTTGTGGTGTTAATTTAACAAAGTTGACAGCA 5521 Query 28048 TAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTCT 28107 || |||||||||||||| || | | ||| || ||||||||| || ||||||||| Sbjct 5522 TATCCAGATACTCGAATAGTTAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTCT 5581 Query 28108 AAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACCCCCTT 28153 || |||||| || | ||||| ||||| | ||| || |||||| Sbjct 5582 AATGTTTCTCGCTTAAGAACATTAACATTGAGATGATGGGCCCCTT 5627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752602617446080