Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq193 187 6e-42 seq182 167 5e-36 seq112 129 1e-24 >seq193 Length=296419 Score = 187 bits (206), Expect = 6e-42 Identities = 177/225 (79%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||||||||| ||||||||||||||||| || | |||||| | |||||| Sbjct 33585 AAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCT 33644 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | |||||||| || || || | |||||||| ||||| ||||| ||||| || ||| Sbjct 33645 TCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 33704 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||||||| ||||| ||||| ||| ||| ||||| | |||| || Sbjct 33705 TGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTT 33764 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG-GTTACTT 195152 || || || ||||| |||||||| | |||||||| || |||| || Sbjct 33765 TTACCAGTTAAAGTCTTTACGAAAATTTGCATTTTTGAGTTATTT 33809 Score = 179 bits (198), Expect = 8e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||||||||| |||||||||||||||||||| | |||||| | |||||| Sbjct 32901 AAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCT 32960 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || ||||| || || || | |||||||| ||||| ||||| ||||| || ||| Sbjct 32961 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 33020 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||||||| ||||| ||||| ||| ||| ||||| | |||| || Sbjct 33021 TGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTT 33080 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| |||||||| | |||||| Sbjct 33081 TTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||||||||| ||||||||||||||||| || | |||||| | |||||| Sbjct 33357 AAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCT 33416 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || ||||| || || || | |||||||| ||||| ||||| ||||| || ||| Sbjct 33417 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 33476 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| |||||| || ||||| ||||| ||| ||| ||||| | |||| || Sbjct 33477 TGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTT 33536 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| |||||||| | |||||| Sbjct 33537 TTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||||||||| || ||||||||||||||||| || | |||||| | |||||| Sbjct 32673 AAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCT 32732 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || ||||| || || || | |||||||| ||||| ||||| ||||| || ||| Sbjct 32733 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 32792 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||||||| ||||| ||||| ||| ||| ||||| | |||| || Sbjct 32793 TGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTT 32852 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || |||||||| || || | |||||| Sbjct 32853 TTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||||||||| || ||||||||||||||||| || | |||||| | |||||| Sbjct 33129 AAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCT 33188 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || ||||| || || || | |||||||| ||||| ||||| ||||| || ||| Sbjct 33189 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 33248 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| |||||| || ||||| ||||| ||| ||| ||||| | |||| || Sbjct 33249 TGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTT 33308 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| |||||||| | |||||| Sbjct 33309 TTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 >seq182 Length=390966 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || || || ||||| || ||||| || | ||| || | |||||||| Sbjct 118199 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCTTC 118258 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 118259 TAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTG 118318 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || ||||| ||||| || ||| || |||||||||| ||||| Sbjct 118319 GATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTT 118378 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 118379 ACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq112 Length=1961624 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| || | ||||||||| ||||| | || ||||| |||||||| Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||||||||| ||||| ||||| || |||||||| || | ||| || || || Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||| ||| || || |||||||| | |||||||| || | ||||| ||||| Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAA 1853613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478302065944