Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq193 187 2e-42 seq135 141 7e-29 seq182 131 1e-25 seq57 107 2e-18 seq174 86.0 5e-12 >seq193 Length=296419 Score = 187 bits (206), Expect = 2e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | |||||| ||||| ||||| |||||||||||||| |||||||| || Sbjct 32654 ATTTCCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTC 32713 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||| | |||| || ||||| ||||| ||||| || ||||| |||||||| || Sbjct 32714 AGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGG 32773 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| ||||| ||||||||||| ||| || || |||| | ||||||||| | ||| Sbjct 32774 TGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTC 32833 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 32834 AACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 183 bits (202), Expect = 2e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||| ||||| |||||||||||||| |||||||| || | | ||| | | Sbjct 33125 ACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCC 33184 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 33185 ATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 33244 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||| || ||| |||| | ||||||||| | ||| ||||| | ||| | Sbjct 33245 ATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 33304 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||||||| ||||| || || ||||| Sbjct 33305 AGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 178 bits (196), Expect = 1e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||| ||||| || ||||||||||| ||||||||||| | | ||| | | Sbjct 32897 ACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCC 32956 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 32957 ATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 33016 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||| || || |||| | ||||||||| | ||| ||||| | ||| | Sbjct 33017 ATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 33076 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||||||| ||||| || || ||||| Sbjct 33077 AGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 178 bits (196), Expect = 1e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||| ||||| || ||||||||||| |||||||| || | | ||| | | Sbjct 33353 ACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCC 33412 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 33413 ATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 33472 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||| || ||| |||| | ||||||||| | ||| ||||| | ||| | Sbjct 33473 ATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 33532 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||||||| ||||| || || ||||| Sbjct 33533 AGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 178 bits (196), Expect = 1e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||| ||||| || ||||||||||| |||||||| || | | ||| | | Sbjct 33581 ACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCC 33640 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||||||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 33641 ATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 33700 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||| || || |||| | ||||||||| | ||| ||||| | ||| | Sbjct 33701 ATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 33760 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||||||| ||||| || || ||||| Sbjct 33761 AGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 >seq135 Length=816381 Score = 141 bits (156), Expect = 7e-29 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | ||| | ||| || || ||||| ||||| || |||||||| | Sbjct 3798 CCACCACGTAAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 3739 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||||||||| || || || ||||| |||||||| || ||| Sbjct 3738 AGAGTACGTCCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 3679 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| || || ||| |||| | ||| ||||| | ||| ||| Sbjct 3678 ATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACT 3619 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCT 101465 || | || | || || || || | |||||| ||||| |||| Sbjct 3618 TCTAAGGTAATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT 3576 >seq182 Length=390966 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | ||| | |||||||||||||| ||||| || ||||| || | Sbjct 118182 CCACCACGTAAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAA 118241 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||||||||| || || || | ||| ||||| || || ||| Sbjct 118242 AGGGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGA 118301 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || ||| ||| |||| | |||||| || | ||| || Sbjct 118302 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 118361 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || | ||||| || || || ||||| Sbjct 118362 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq57 Length=911805 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || ||||| |||| | ||| | | || || ||||||||||| || || || Sbjct 75455 TTTTGGATGTTGTAGTCGGAAAGAGTACGGTTGTCTTCTAATTGCTTACCAGCGAAGATT 75514 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| |||||||| || ||||| ||||| || ||||| || || | |||||| | | Sbjct 75515 AAACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGGATCTTGTTCTTTACATTAACA 75574 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||| || | ||| || ||||| |||| || || ||||| | || |||||||| Sbjct 75575 ATGCTGTCGGAAGATTCAACCTCAAGGGTGATAGTCTTTCCGGTAAGGGTCTTTACAAAA 75634 Query 101462 ATCT 101465 |||| Sbjct 75635 ATCT 75638 >seq174 Length=448832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||||| || ||||| | || ||||||||||| | | ||| | |||| || Sbjct 226206 ACTAAATGAATAGTCGATTCATCTTCGATATTGTAATCAGAAACAGTACGTTCATCATCT 226265 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| |||||| ||| || |||| || | ||| |||||| |||||| || ||||| Sbjct 226266 AATTGTTTACCTTTAAAAATTAAACTTTGCTCATCTATCGGAATACCTTCTATAACTTGA 226325 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 || ||| ||| || ||| || ||| ||| Sbjct 226326 ATCTTTGTTTTAACTTTTTTTATAGTATCA 226355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277279522824