Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq193 100 2e-16 seq135 82.4 6e-11 >seq193 Length=296419 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| ||||||||||||||||||||||| ||| | || Sbjct 32895 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGT 32954 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || ||||| ||||| || | || |||||||| | |||| || ||| Sbjct 32955 CCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33014 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | || || || | || || || | ||| Sbjct 33015 TTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTA 33074 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| ||||| ||||| ||||| Sbjct 33075 ATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| ||||||||||||||||| ||||| ||| | || Sbjct 33351 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGT 33410 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || ||||| ||||| || | || |||||||| | |||| || ||| Sbjct 33411 CCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33470 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | || || || | || || || | ||| Sbjct 33471 TTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTA 33530 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| ||||| ||||| ||||| Sbjct 33531 ATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| ||||||||||||||||| ||||| ||| | || Sbjct 33579 AGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGT 33638 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || |||||||| ||||| || | || |||||||| | |||| || ||| Sbjct 33639 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCC 33698 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || || | | || || || | || || || | ||| Sbjct 33699 TTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTA 33758 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| ||||| ||||| ||||| Sbjct 33759 ATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||| ||||| ||| | || | || || || || ||||| ||||| Sbjct 32694 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAA 32753 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || ||||| || ||||||| || || Sbjct 32754 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTT 32813 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || || | ||||| ||||| || || |||||||| ||| Sbjct 32814 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACA 32873 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 32874 AAAATTTGCAT 32884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||| ||||| ||| | || | || || || || ||||| ||||| Sbjct 33150 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAA 33209 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || ||||| || ||||||| || ||| Sbjct 33210 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTT 33269 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || || | ||||| ||||| || || ||||| ||||| Sbjct 33270 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACG 33329 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 33330 AAAATTTGCAT 33340 >seq135 Length=816381 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || |||||||| ||||||||||| ||| | || | || || || || Sbjct 3775 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTG 3716 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| || || || | || |||||||| | |||| || ||||| || |||||| Sbjct 3715 CTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTT 3656 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | || || || | || || || | ||||| || || || || Sbjct 3655 AGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTAATGGTCTTACCTGT 3596 Query 48743 CAAAGTTTTTACAAAAATCT 48762 | |||||| |||||||||| Sbjct 3595 AAGAGTTTTAACAAAAATCT 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936522898936