Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq193 149 1e-30 seq112 122 2e-22 >seq193 Length=296419 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||||| |||||| ||||| || | || | ||| ||||||||||| || Sbjct 32688 GTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 32747 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||||||||| | |||||||| || || || ||||| |||||||| || || | || Sbjct 32748 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 32807 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtt 193343 | ||| |||||| || ||||| |||||||||| ||| ||||||||||| |||| ||| Sbjct 32808 ACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTT 32867 Query 193344 tttacaaatatttgcat 193360 || ||||| |||||||| Sbjct 32868 TTAACAAAAATTTGCAT 32884 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||||| |||||| ||||| || | || | ||| ||||||||||| || Sbjct 33144 GTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 33203 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||||||||| | |||||||| || || || ||||| |||||||| || || | || Sbjct 33204 GCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTG 33263 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtt 193343 | |||| |||||| || ||||| |||||||||| ||| ||||||||||| |||| || Sbjct 33264 ACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 33323 Query 193344 tttacaaatatttgcat 193360 ||||| || |||||||| Sbjct 33324 TTTACGAAAATTTGCAT 33340 Score = 147 bits (162), Expect = 4e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| |||||| ||||| || | || | ||| ||||||||||| || |||||| Sbjct 33378 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAA 33437 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 ||||| | |||||||| || || || ||||| |||||||| || || | || | |||| Sbjct 33438 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTT 33497 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttaca 193349 |||||| || ||||| |||||||||| ||| ||||||||||| |||| || ||||| Sbjct 33498 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACG 33557 Query 193350 aatatttgcat 193360 || |||||||| Sbjct 33558 AAAATTTGCAT 33568 Score = 147 bits (162), Expect = 4e-30 Identities = 173/233 (74%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| |||||| ||||| || | || | ||| |||||||| || || |||||| Sbjct 33606 TCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 33665 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 ||||| | |||||||| || || || ||||| |||||||| || || | || | ||| Sbjct 33666 ATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTT 33725 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttaca 193349 |||||| || ||||| |||||||||| ||| ||||||||||| |||| || ||||| Sbjct 33726 TCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACG 33785 Query 193350 aatatttgcattttattagtaaaataattattttaaataatatatactttata 193402 || ||||||||||| | || ||||||| ||||||||| ||| ||| Sbjct 33786 AAAATTTGCATTTT-TGAG--------TTATTTT--ATAATATATGCTTAATA 33827 Score = 138 bits (152), Expect = 2e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| || ||||||||||| | |||||||| || || || ||||| || Sbjct 32957 ATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 33016 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | || | ||| |||||| || ||||| |||||||||| ||| || Sbjct 33017 ATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 33076 Query 193325 AGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||||||| |||| || ||||| || |||||||| Sbjct 33077 AGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 >seq112 Length=1961624 Score = 122 bits (134), Expect = 2e-22 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || | ||||| || ||||||||||| ||||| || ||||| | Sbjct 1853786 AATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATTAAACG 1853727 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || || || || ||||| || ||||| || ||| | || | ||| | |||| | Sbjct 1853726 TTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACT 1853667 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttg 193357 |||||||||||||| || || |||||||| || || || || ||||| || || || | Sbjct 1853666 GTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATCT- 1853608 Query 193358 cattttattagta-aaataattatt 193381 |||||| || || |||| ||||| Sbjct 1853607 -ATTTTA-TATTATCAATAGTTATT 1853585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899651791002240