Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq193 178 3e-39 seq112 89.7 1e-12 seq174 84.2 4e-11 >seq193 Length=296419 Score = 178 bits (196), Expect = 3e-39 Identities = 187/244 (77%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 192293 tttttAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 ||||| |||||| | ||||| | ||||||||| ||||| || | ||||| ||||| Sbjct 32645 TTTTT--TTTAAT--TTCCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTT 32700 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 ||||| || ||||| | || ||| |||| || ||||||||||||||||| ||||| | Sbjct 32701 GAATATTGTAGTCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAAC 32760 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 |||||||| ||||| || ||||| |||||||| || || || || || |||| Sbjct 32761 GTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAG 32820 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 || || ||||| ||||||| |||||| |||||||||||||| ||||||| ||| || | Sbjct 32821 TGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTT 32880 Query 192533 GCAT 192536 |||| Sbjct 32881 GCAT 32884 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| ||||| || | ||||| ||||| ||||| || ||| Sbjct 33111 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 33170 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || ||||||||||||||||| ||||| | |||||||| ||| Sbjct 33171 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33230 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| |||| || || ||||| Sbjct 33231 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33290 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||| |||||||||||||| || || | || || ||||| Sbjct 33291 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| ||||| || | ||| | ||||| ||||| |||||| Sbjct 32883 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCA 32942 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || ||||||||||||||||| ||||| | |||||||| ||| Sbjct 32943 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33002 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || || |||| || || ||||| Sbjct 33003 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33062 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||| |||||||||||||| || || | || || ||||| Sbjct 33063 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| ||||| || | ||| | ||||| ||||| || ||| Sbjct 33339 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33398 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || ||||||||||||||||| ||||| | |||||||| ||| Sbjct 33399 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33458 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| |||| || || ||||| Sbjct 33459 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33518 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||| |||||||||||||| || || | || || ||||| Sbjct 33519 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| ||||| || | ||| | ||||| ||||| || ||| Sbjct 33567 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33626 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || ||||| ||||||||||| ||||| | |||||||| ||| Sbjct 33627 GAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33686 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || || |||| || || ||||| Sbjct 33687 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33746 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||| |||||| |||||||||||||| || || | || || |||||||| Sbjct 33747 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 >seq112 Length=1961624 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| | |||| | || || ||||||||||| || |||| Sbjct 1853792 CTTTTGA-ATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGA 1853734 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 |||| | ||||| || ||||| || ||||| || ||||| || || || || ||||| Sbjct 1853733 TTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGA 1853674 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| || || || || || || || || || || || ||||| | ||||| | | Sbjct 1853673 CAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGA 1853614 Query 192527 ATATCTGCATTTTAT 192541 | |||| ||||||| Sbjct 1853613 AAATCT--ATTTTAT 1853601 >seq174 Length=448832 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||||||| | ||| | || | |||||| |||||||| | || ||||||||||| Sbjct 226206 ACTAAATGAATAGTCGATTCATCTTCGATATTGTAATCAGAAACAGTACGTTCATCATCT 226265 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||||||||| ||| ||||| || || | ||| || || |||||| || |||| Sbjct 226266 AATTGTTTACCTTTAAAAATTAAACTTTGCTCATCTATCGGAATACCTTCTATAACTTGA 226325 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATC 192476 || || |||| || || |||||| ||| Sbjct 226326 ATCTTTGTTTTAACTTTTTTTATAGTATC 226354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477073633200