Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq193 172 1e-37 seq112 98.7 2e-15 seq13 96.9 6e-15 >seq193 Length=296419 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| ||||| || | ||||| ||||| |||||| || || Sbjct 33111 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCA 33170 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || ||||||||||||||||||||||| | ||||| || ||| Sbjct 33171 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33230 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||||| || || ||||| Sbjct 33231 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33290 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||| |||||||||||||| || || | ||| || ||||| Sbjct 33291 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| ||||| ||||| || | ||||| ||||| |||||| || || || Sbjct 32658 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAA 32717 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || ||| | || || ||||||||||||||||||||||| | ||||| || ||||| Sbjct 32718 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGA 32777 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| |||||||| || || || || || ||||| || || ||||| ||| Sbjct 32778 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACT 32837 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| |||||| |||||||||||||| ||||||| || || ||||| Sbjct 32838 TCTAAAGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| ||||| || | ||| | ||||| |||||| ||||| Sbjct 32883 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCA 32942 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || ||||||||||||||||||||||| | ||||| || ||| Sbjct 32943 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33002 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || || || ||||| || || ||||| Sbjct 33003 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33062 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||| |||||||||||||| || || | ||| || ||||| Sbjct 33063 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| ||||| || | ||| | ||||| |||||| || || Sbjct 33339 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33398 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || ||||||||||||||||||||||| | ||||| || ||| Sbjct 33399 GAAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33458 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||||| || || ||||| Sbjct 33459 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCA 33518 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||| |||||||||||||| || || | ||| || ||||| Sbjct 33519 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| ||||| || | ||| | ||||| |||||| || || Sbjct 33567 ATACCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCA 33626 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || ||||| ||||||||||||||||| | ||||| || ||| Sbjct 33627 GAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGT 33686 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || || || ||||| || || ||||| Sbjct 33687 GGAATACCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCA 33746 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||||| |||||| |||||||||||||| || || | ||| || |||||||| Sbjct 33747 ACTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 >seq112 Length=1961624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || | || || | ||| || ||||||||||| || || ||||| | Sbjct 1853786 AATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATTAAACG 1853727 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| || ||||| || ||||| || || || || ||||| ||| | Sbjct 1853726 TTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACT 1853667 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || || || || || || || || ||||| | ||||| | ||| |||| Sbjct 1853666 GTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATCT- 1853608 Query 172067 CATTTTAT 172074 ||||||| Sbjct 1853607 -ATTTTAT 1853601 >seq13 Length=1075363 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||||||| ||||||||| | |||||||| ||| || ||| || ||| | Sbjct 695814 AATTGTTTACCAAGAAAAATTAAACGTTGTTGGTCTATTGGAATATTTTCCTTTTCTCGA 695873 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA--CTTCTAGAGTAATGGTTT 172038 ||||| | || | ||| | |||||||| | ||||| |||| | |||||| |||| Sbjct 695874 ATTTTGGTCTTAATATTTTTAATAGTATC--ATTATTCTCGGCTTCAATAGTAATTGTTT 695931 Query 172039 TACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||||||||| ||| ||||||| || | |||||| Sbjct 695932 TACCAGTTAAAGTTCTAATGAAAATATTCATTTT 695965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133375105600