Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq68 143 8e-29 seq152 123 7e-23 seq158 113 1e-19 seq212 89.7 2e-12 seq175 87.8 5e-12 seq169 86.0 2e-11 >seq68 Length=876198 Score = 143 bits (158), Expect = 8e-29 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | || || | |||||| ||||||||||||||| | ||| ||||||||| Sbjct 166921 TCTTCCAAAGATTTAATAAGACGACGTTGAATATAACCAGTTTCTGCTGTCTTTACAGCT 166862 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||||| ||| |||||||||||||||| ||||| || | |||| || || Sbjct 166861 GTATCAATTAAACCTTCACGACCACCCATAGCGTGGAAAAAGAATTCTTGTGGAGTTAAA 166802 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | | || | || ||||||||||| | || || | || ||| ||| Sbjct 166801 CCACGAAGATATGAATTTTCTACGAAACCACGAGATTCTGGACTTTGATCATCCTTAGTA 166742 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || || | | | | ||| |||| |||||||| || |||||||| || Sbjct 166741 AAGTGAGGAAGAGTTCTATATTTAAAACCGAATGGAATACGCTTACCTTCAACGTTTTGT 166682 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | |||| || |||||||| Sbjct 166681 TGACCTACACAAGCTGTCATTTGAGAAATATT 166650 Score = 120 bits (132), Expect = 9e-22 Identities = 117/149 (79%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||| |||||| ||| || |||||| | || || || ||| || ||||||||| | Sbjct 167704 AATTCCTTCAA-ACGTGGTACACCAAGAGTAACATT---CTTTGAACTTACACCAGCATA 167649 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||| | || | |||||||| ||| ||||||||||||||||| ||||| | Sbjct 167648 GTGGAAAGTATTTAATGTCATTTGAGTAGCTGGTTCACCAATACTTTGTGCAGCAATAGT 167589 Query 301935 ACCAACCATTTCTCCTGGTGCTACAATAG 301963 |||||||||||| ||||| ||||| || Sbjct 167588 ACCAACCATTTCACCTGGATGTACAAGAG 167560 Score = 89.7 bits (98), Expect = 2e-12 Identities = 307/463 (66%), Gaps = 17/463 (4%) Strand=Plus/Minus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACGTTC 303696 ||||||||||| |||||||| ||||||||||| ||||| || ||| | | | || Sbjct 165838 TGTAAATTCATTTCATCACCATCAAAATCAGCGTTATATGGAGATGTAACAGATAAATTT 165779 Query 303697 ATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCATAGACATTCTG 303756 | |||||||| | | |||||| | |||| |||| ||||||| |||| || Sbjct 165778 AAACGGAAAGTGGAA---TATGGCATAACTCTAACTTTGTGACCCATCATACTCATTTTG 165722 Query 303757 TGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT--TTAATACATGACGATGAA 303814 |||| | ||| ||||||||||||| || ||||| | ||||| |||||| | || Sbjct 165721 TGTAATGATGGTTGACGATTGAAAATAACTAAATCACCATCATTAAT--ATGACGTTCAA 165664 Query 303815 CCTTATCTCCGTCCTCTAAAACAATAGAGTCCCTATCTA-CATATCGCAGACTGATACAA 303873 | |||| || | |||| || | ||| |||| || | | | || | | Sbjct 165663 CTTTATAACCAATTTGTAAATGAACA-CTTCCACTTCTAGCAAACTTTAAATCAATTCTA 165605 Query 303874 TCGCCGTTCTTCTTCTCGTAAAT-TTTGGCTCCTGGATATACATCAGGACCGTTCTTGAT 303932 || || || |||| || || ||| || || |||| | ||| ||||| || |||| Sbjct 165604 TCCCCATT-ATCTTTAAATACATATTTAGCACCAGGATGTTCATTTGGACCATTGTTGAC 165546 Query 303933 AAAGGTCATTAAATACTGCT-TGTT-CCTTGAGTTCACCGTCACTGGCTTGGTTAAATTC 303990 ||| | | || | | || | || ||| ||| || || |||| |||||||| Sbjct 165545 AAA-TTGTTGAAGTTCATCTATATTATATTGTGTT-ACTGTTTCTGGGAATGTTAAATTT 165488 Query 303991 TTGGCGATTTTCAGCGGAACGCCTAACTCGCT-AATGGATAAGTTGGGGTCAGGTGTAAT 304049 | || || | || || ||| ||| | | ||| || | || || ||| ||||| Sbjct 165487 CTAGCAATACTTCTTGGTACACCT-ACTTGATCAATAGAAATATTAGGATCACCAGTAAT 165429 Query 304050 TACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTA 304092 |||| |||||| |||||| ||||||||||||||||||||| Sbjct 165428 AACAGTACGAGCAGAAAAATCCACACGCTTACCCATAAGATTA 165386 >seq152 Length=734684 Score = 123 bits (136), Expect = 7e-23 Identities = 352/527 (67%), Gaps = 18/527 (3%) Strand=Plus/Plus Query 233261 AAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGA 233320 |||||| || |||||| ||| |||||||||||| |||||||||||| | ||| ||| Sbjct 196049 AAAAATTGTGCAGCACCATGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAGA 196108 Query 233321 CCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGA 233380 ||||||||| || ||||| | |||| ||||||||| | || | |||||| || Sbjct 196109 CCACCATCACGAGATCTACCTTCTACTGGTTGACGAGTAAGAATTTGTACTGGACCACGA 196168 Query 233381 GCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCA 233440 |||||| | ||| ||||| | ||||||||||| | | |||||| || ||| Sbjct 196169 GCACGACTGTGAATCTTATCATCTACCATATGCTTTAAACGTTGATAATATGTTGGTCCA 196228 Query 233441 ATAAATAGTTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACC- 233499 | || | || ||| || | | | |||| | ||| | | | |||||| ||| Sbjct 196229 AGGAAAATTTGTGCTTGAAGCTTCTTACCAGTATGACCATTAAACATAACTTCGAAACCA 196288 Query 233500 CGATGAATTGTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCTTT 233559 ||| || | || ||| | ||| |||| || ||||| || | | | || Sbjct 196289 CGA-GATTGATATCCATTTTCTCTTAAAAG-TTTTGAAATAGCTTCTACAGT-AAC---- 196341 Query 233560 ATTAGCAAACGCAGTACAATCACCAAAACCACCA-TACGTCGCACACGCTTTACCCATTA 233618 || || ||| | || |||||| | ||||| || | | | | | ||||| | | Sbjct 196342 ATCAGTAAATGGCGTTGCATCACCTTCATCACCAGTAAG-AGTAGAAACCTTACCAAGCA 196400 Query 233619 AAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTA 233678 || ||| | ||| ||||| |||||||| | ||| | ||| || ||||| ||||| | Sbjct 196401 AACATTCAACCAAGTGACCAATAGTCATACGTGATGGAATAGCATGAGGATTAATAATAA 196460 Query 233679 AATCTGGACGTACT-CCCTCCGATGTAAAAGGCATATCTTTTTCAG--GGAT-TATCAGT 233734 |||||| ||| | || | | ||||| |||||||| ||||| ||| ||| Sbjct 196461 TATCTGG-TGTAATACCATTAGCAGTAAATGGCATATC---TTCAGTACGATAGGTCATA 196516 Query 233735 CCAACTGTTCCCTTTTGGCCGCATCTACTACAGAATTTATCACCCAT 233781 ||||| || || ||||| || ||||||| ||||||||||||||| Sbjct 196517 CCAACAGTACCTTTTTGACCATGTCTACTAGCGAATTTATCACCCAT 196563 Score = 116 bits (128), Expect = 1e-20 Identities = 218/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 |||||| || ||| ||||| || | || |||||| || || | || || |||| Sbjct 195988 ACCACATAAATCACAAACATGAACACGATAGGCATCACTAGCATCGAAAAGACGTTCCTT 196047 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 || | | ||||| || |||||||||||| |||||||||||||||||||| Sbjct 196048 CAAAAATTGTGCAGCACCATGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAG 196107 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591 ||||||||| |||| ||||| || | || |||||||| ||| | | ||||| Sbjct 196108 ACCACCATCACGAGATCTACCTTCTACTGGTTGACGAGTAAGAATTTGTACTGGACCACG 196167 Query 251592 GGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 | || || || |||||||| |||||||||||| | ||| || || ||| || || Sbjct 196168 AGCACGACTGTGAATCTTATCATCTACCATATGCTTTAAACGTTGATAATATGTTGGTCC 196227 Query 251652 GATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707 | ||| | |||| |||| | || ||||| || | ||| ||||||||||| Sbjct 196228 AAGGAAAATTTGTGCTTGAAG----CTTCTTACCAGTATGACCATTAAACATAACTTCGA 196283 Query 251708 TTCCATTAGATTCATAACCA 251727 ||| ||||| ||| ||| Sbjct 196284 AACCACGAGATTGATATCCA 196303 >seq158 Length=610027 Score = 113 bits (124), Expect = 1e-19 Identities = 246/366 (67%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 59981 GTGCTAAAACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGG 60040 || ||| |||| ||||||||||| | || ||||| ||||||| ||| || | ||| || Sbjct 600279 GTACTATAACCTGTACCAATACCTTCTGCACCATTAATAAGAACCATAGGTAAAATGGGA 600338 Query 60041 ATATAATAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCG 60100 ||||| | ||| |||| | | ||||||||| ||||| ||| | | || || Sbjct 600339 ATATACCATTTTGGTTCAATCATTTGACCATCATCATTTAAATATTCAATGATATTATCA 600398 Query 60101 TC-AATTTCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTC 60159 || ||||| |||| || | || || || | |||||| ||||||||||| | | Sbjct 600399 TCTGATTTCTTGAAA-ATTAATCTAGCAACTTTAGCTAATTGAGTGAAAATATAACGAGC 600457 Query 60160 GGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAG 60219 || || ||||| ||||| | ||| || || ||||| || ||||| || | Sbjct 600458 ACTAGCAGCATCCTTACCACCTTGTAAACGTGTACCGAATTGACCATTTGGAACTAACAA 600517 Query 60220 ATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACT 60279 || || ||| || || |||| |||||| | | |||||||||| | | ||| Sbjct 600518 TGGAACATTATTACTACCAACAAAATCTTGAGCTAAATTAACAATAGCAAGAGAAAGACT 600577 Query 60280 GGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTT 60339 |||||| ||||| || | | |||||| | || ||| ||| | | ||| || || || Sbjct 600578 TTGTTCACCATGATGGTAGGCTGTATGTTCAGCAATATAACCAGTAAGTTGGGCAACCTT 600637 Query 60340 AATTTC 60345 |||||| Sbjct 600638 AATTTC 600643 >seq212 Length=191874 Score = 89.7 bits (98), Expect = 2e-12 Identities = 218/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||||| | ||| ||||| |||| | || || | |||| | || | || Sbjct 119300 TACCAACAGCATCTAGTTCATCAATAAAAACAATGCATGGTGCCTTTTTACGAGCTAATG 119241 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 | | |||| | || | || || | ||||||||| | || |||||||| | Sbjct 119240 CTACCAATTGGCGAACTCTTTTAGCACCGACACCAACATAAAGCTCATCAAATTCACTAC 119181 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||||| ||| | |||| | ||| ||||| ||||| | || ||| || | Sbjct 119180 CACTCATTTGAAAGAAAGGTACACCAGATTCTCCTGCAACTGCTTTAGCAAGATAAGTTT 119121 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 ||||||| || ||||| || | | || | || || || | |||| | ||| | || Sbjct 119120 TACCTGTACCTGGTGGACCATAAAGTAATATACCTTTAGGAAGTTTTCCTCCA--ATTCT 119063 Query 289268 --TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||||||| || |||||| |||||| || | ||| |||||| | ||||| || Sbjct 119062 TGTAAATTTCTCTGGATTCTTTAGAAATTCAACTACTTCTCTAAGTTCTTCCTTTGCTTC 119003 Query 289326 ATC-ACATCCTGCTACATCAGCAAAA 289350 ||| ||| ||| |||||| ||||| Sbjct 119002 ATCGACA-CCTTGAACATCATCAAAA 118978 >seq175 Length=448337 Score = 87.8 bits (96), Expect = 5e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| || ||| |||| ||| | || ||||| ||| | ||| ||||||||| Sbjct 314437 AATTTCACGAAGACGTGGAATACCGAGAGTAACGTT---CTTAGCACCAAAACCAGCAAA 314493 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||| || | || | ||||||| |||| ||||||||||||| || || | | Sbjct 314494 GTGGAAAGTGTTTAAGGTCATTTGAGTACTTGGTTCACCAATACTTTCAGCAGCTAATAA 314553 Query 301935 ACCAACCATTTCTCCTGGT 301953 |||||| |||||||||| Sbjct 314554 ACCAACAGATTCTCCTGGT 314572 >seq169 Length=489420 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| ||| |||| | ||||||||||||||||||||| | ||| ||||||||||| || Sbjct 118118 GCACCATGACCAATTAAACAATCACGTTCCATTTCACCTACACGAAGACCACCATCCCTT 118059 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || | ||| | || ||| | |||||| || | | ||| ||| | | || Sbjct 118058 GAACGACCTTCAGTTGGTTGTCTAGTTAATACTGCACGCTTACCACGAGATCTAGCATGC 117999 Query 233393 ATTTTATCTTTAACCATATGCTTCA 233417 ||||||||| ||||||||||||| Sbjct 117998 ATTTTATCTAATACCATATGCTTCA 117974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813225022184