Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq193 143 4e-29 seq174 102 1e-16 seq13 89.7 8e-13 >seq193 Length=296419 Score = 143 bits (158), Expect = 4e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || ||||| |||||| | || || ||| | | Sbjct 33111 TGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTG 33052 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || || || ||| ||| ||||| |||||||| ||||||| Sbjct 33051 ACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 32992 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| ||| | || | | ||||| |||| Sbjct 32991 AACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAATA 32932 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || ||||| ||||| Sbjct 32931 TTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 32898 Score = 143 bits (158), Expect = 4e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || ||||| |||||| | || || ||| | | Sbjct 33339 TGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTG 33280 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || ||| ||| ||||| |||||||| ||||||| Sbjct 33279 ACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 33220 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| ||| | || | | || || |||| Sbjct 33219 AACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATA 33160 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || ||||| ||||| Sbjct 33159 TTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 33126 Score = 143 bits (158), Expect = 4e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || ||||| |||||| | || || ||| | | Sbjct 33567 TGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTG 33508 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || ||| ||| ||||| |||||||| ||||||| Sbjct 33507 ACACTATTGAAAATGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 33448 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| ||| | || | | || || |||| Sbjct 33447 AACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATA 33388 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || ||||| ||||| Sbjct 33387 TTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 33354 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| |||||| | || || ||| | | Sbjct 32883 TGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTG 32824 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || || || ||| ||| ||||| |||||||| ||||||| Sbjct 32823 ACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 32764 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||||||||| ||| | || | | || || |||| Sbjct 32763 AACGTTTAATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAATA 32704 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || ||||| ||||| Sbjct 32703 TTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 32670 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || ||||| |||||| | || || ||| | | Sbjct 33795 TGCAAATTTTCGTAAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCTG 33736 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || || || ||| ||| ||||| |||||||| ||||||| Sbjct 33735 ACACTATTGAAAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAAC 33676 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||| |||||||| ||| | || | | || || |||| Sbjct 33675 AACGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGACTACAATA 33616 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || ||||| ||||| Sbjct 33615 TTCAAAAAGAATCCACTCTTCACTTAGTCTTACG 33582 >seq174 Length=448832 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||||||| |||| || |||| || || ||| ||| |||||| ||||| ||| | Sbjct 226354 GATACTATAAAAAAAGTTAAAACAAAGATTCAAGTTATAGAAGGTATTCCGATAGATGAG 226295 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| | |||||| ||||||||||||||||||| | | || | | ||||| ||| Sbjct 226294 CAAAGTTTAATTTTTAAAGGTAAACAATTAGATGATGAACGTACTGTTTCTGATTACAAT 226235 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || | ||||||||||| |||||||| Sbjct 226234 ATCGAAGATGAATCGACTATTCATTTAGT 226206 >seq13 Length=1075363 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||||| | ||| ||||| || ||||||||||||||||| | || |||| |||||| Sbjct 695956 ATTTTCATTAGAACTTTAACTGGTAAAACAATTACTATTGAAGCCGAGAATAATGATACT 695897 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 ||| ||||| | || | ||||| | | || ||| |||||| || |||||| | Sbjct 695896 ATTAAAAATATTAAGACCAAAATTCGAGAAAAGGAAAATATTCCAATAGACCAACAACGT 695837 Query 146157 CTCATTTTTGCAGGTAAACAATTA 146180 | |||||| |||||||||||| Sbjct 695836 TTAATTTTTCTTGGTAAACAATTA 695813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786164120117440