Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq193 156 3e-33 seq135 122 7e-23 >seq193 Length=296419 Score = 156 bits (172), Expect = 3e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| || |||||||||||||| || || || | || || || ||| || Sbjct 32676 ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 32735 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 32736 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG- 32794 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||||| |||| | |||||||||| ||| ||||| | ||| |||||||| Sbjct 32795 AATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTT 32854 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||||||||| || ||||| Sbjct 32855 ACCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 150 bits (166), Expect = 1e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| ||||||||||||||||| || ||||| | || || || ||| || Sbjct 32904 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCTTCT 32963 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 32964 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG- 33022 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||||| |||| | |||||||||| ||| ||||| | ||| |||||||| Sbjct 33023 AATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTT 33082 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || ||||| Sbjct 33083 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 150 bits (166), Expect = 1e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| ||||||||||||||||| || || || | || || || ||| || Sbjct 33360 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33419 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 33420 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG- 33478 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| |||||| |||| | |||||||||| ||| ||||| | ||| |||||||| Sbjct 33479 AATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTT 33538 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || ||||| Sbjct 33539 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| || |||||||||||||| || || || | || || || ||| || Sbjct 33132 ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33191 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 33192 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG- 33250 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| |||||| |||| | |||||||||| ||| ||||| | ||| |||||||| Sbjct 33251 AATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTT 33310 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || ||||| Sbjct 33311 ACCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| ||||||||||||||||| || || || | || || || ||| || Sbjct 33588 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33647 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 33648 AATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG- 33706 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||||| |||| | |||||||||| ||| ||||| | ||| |||||||| Sbjct 33707 AATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTT 33766 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || || || || |||||||| Sbjct 33767 ACCAGTTAAAGTCTTTACGAAAATTTGCATTTT 33799 >seq135 Length=816381 Score = 122 bits (134), Expect = 7e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || || | ||| || |||||||| ||||||||||| ||||| | || || || Sbjct 3789 AAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGT 3730 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||| || ||||| | || || | ||| ||||| || |||||||| || Sbjct 3729 CCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCC 3670 Query 29689 TTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || ||||| ||| || | |||||| |||| | ||| ||||| ||| ||||| | || Sbjct 3669 TTATCTTG-AATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGT 3611 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 || || || || || | ||||||||||| |||| |||| ||| Sbjct 3610 AATGGTCTTACCTGTAAGAGTTTTAACAAAAATCTATTTTTTTAAA 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218110792712