Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq154 127 3e-24 seq158 116 5e-21 seq68 100 4e-16 seq169 95.1 2e-14 seq152 89.7 7e-13 >seq154 Length=675934 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | || ||| |||| | |||| |||||||||||| |||| | | | | Sbjct 470840 AAGAATTGTTTTGGTTTATTAGAGGTGATACTGATTCAAAAATATTATCAAAAAAAAATA 470899 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 || | ||||| | | |||||||||||||||||| | ||| | ||| || || | | Sbjct 470900 TTCATATTTGGGATGGAAATGGTTCTCGTGAATTTCTTGATAAAATTGGATTAACAAATA 470959 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 168705 || ||||||| |||||||| ||||| ||||| | |||||| | ||| || ||| ||| Sbjct 470960 GAGAAGAAGGGGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGTGCTAAAT 471019 Query 168706 ATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCA 168748 |||| || ||| ||||||| || || ||||||||| ||| || Sbjct 471020 ATATAGATTGTCATACAGACTATACAGGACAAGGAAAAGATCA 471062 >seq158 Length=610027 Score = 116 bits (128), Expect = 5e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||||||||| ||| | | ||| ||| |||| ||||| |||| ||| | || |||||| Sbjct 600640 ATTAAGGTTGCCCAACTTACTGGTTATATTGCTGAACATACAGCCTACCATCATGGTGAA 600581 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 163117 |||| | | | | |||| |||| || || |||||||||||||||| |||||| | Sbjct 600580 CAAAGTCTTTCTCTTGCTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATGTT 600521 Query 163118 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 163176 |||| | | || |||||||||| ||||| | ||| |||| ||||| ||| |||| Sbjct 600520 CCATTGTTAGTTCCAAATGGTCAATTCGGTACACGTTTACAAGGTGGTAAGGATGCTGC 600462 >seq68 Length=876198 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| | Sbjct 165799 CATATAACGCTGATTTTGATGGTGATGAAATGAATTTACACGTTCCTCAATCATATGAAA 165858 Query 52048 CTACTGCTGAATTACAAGAA 52067 | | |||||| | |||||| Sbjct 165859 CAAAAGCTGAAATTCAAGAA 165878 >seq169 Length=489420 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 || ||| |||| |||||||| | |||| || |||| | |||| || ||||||| | || Sbjct 117474 CCAGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAGGGTGTTTGTGGTTTAAT 117532 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | | |||||||||||||||||||| | | ||||| || |||||||||||||| || Sbjct 117533 TGTTAATCAAGAAGATATGCCATTTACTGATCTTGGTATTGTTCCAGATATTATTATGAA 117592 Query 193565 TCCAAATTGTA 193575 |||| || ||| Sbjct 117593 TCCACATGGTA 117603 >seq152 Length=734684 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 193450 AAATAGGGGATAAATT---TTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGATTT 193506 |||| || |||||||| | || || |||| | ||||||| ||| |||||||| | Sbjct 196565 AAATGGGTGATAAATTCGCTAGT--AGACATGGTC-AAAAAGGTACTGTTGGTATGACCT 196509 Query 193507 ATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATC 193566 || ||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 196508 ATCGTACTGAAGATATGCCATTTACTGCTAATGGTATTACACCAGATATTATTATTAATC 196449 Query 193567 CAAATTGTATTCCATCCAGAATGACCATT 193595 | || ||||||||| | ||||| ||| Sbjct 196448 CTCATGCTATTCCATCACGTATGACTATT 196420 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 193026 AATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTA 193085 ||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||| | Sbjct 197025 AATGCTATTGTCGCTATTGCTTGTTATAGTGGTTATAATCAAGAAGATTCAATTATTATG 196966 Query 193086 AATAAAGCTTCTATTGAAAGAGG 193108 ||| || ||| ||||| ||||| Sbjct 196965 AATCAAAGTTCAATTGATAGAGG 196943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635175757984960