Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq154 136 5e-27 seq158 111 2e-19 seq68 100 4e-16 seq169 87.8 2e-12 >seq154 Length=675934 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | || ||| |||||| |||| |||||||||||| |||| | | | | Sbjct 470840 AAGAATTGTTTTGGTTTATTAGAGGTGATACTGATTCAAAAATATTATCAAAAAAAAATA 470899 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | ||||| ||| |||||||||||||||||| | ||| | || || || | | Sbjct 470900 TTCATATTTGGGATGGAAATGGTTCTCGTGAATTTCTTGATAAAATTGGATTAACAAATA 470959 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 || ||||||| |||||||| ||||| ||||| | |||||| | ||| || ||| ||| Sbjct 470960 GAGAAGAAGGGGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGTGCTAAAT 471019 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGA 171825 |||| || ||| ||||||| || |||||||||||| Sbjct 471020 ATATAGATTGTCATACAGACTATACAGGACAAGGA 471054 >seq158 Length=610027 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||| ||||| ||| | | ||| ||| |||| ||||| |||| || | ||||||||| Sbjct 600640 ATTAAGGTTGCCCAACTTACTGGTTATATTGCTGAACATACAGCCTACCATCATGGTGAA 600581 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 |||| | | | | |||| |||| || || |||||||||||||||| |||||| | Sbjct 600580 CAAAGTCTTTCTCTTGCTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATGTT 600521 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 |||| | | || |||||||||| ||||| | ||| |||| ||||| ||| |||| Sbjct 600520 CCATTGTTAGTTCCAAATGGTCAATTCGGTACACGTTTACAAGGTGGTAAGGATGCTGC 600462 >seq68 Length=876198 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| | Sbjct 165799 CATATAACGCTGATTTTGATGGTGATGAAATGAATTTACACGTTCCTCAATCATATGAAA 165858 Query 50498 CTACTGCTGAATTACAAGAA 50517 | | |||||| | |||||| Sbjct 165859 CAAAAGCTGAAATTCAAGAA 165878 >seq169 Length=489420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/133 (77%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 192999 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193057 || ||| |||| |||||||| | ||| || |||| | |||| || ||||||| | || Sbjct 117474 CCAGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAGGGTGTTTGTGGTTTAAT 117532 Query 193058 TTATTCACAAGAAGATATGCCATTTAC--AACTTCAGGTATGGTACCAGATATTATTATT 193115 | | |||||||||||||||||||| | ||| ||||| || |||||||||||||| Sbjct 117533 TGTTAATCAAGAAGATATGCCATTTACTGATCTT--GGTATTGTTCCAGATATTATTATG 117590 Query 193116 AATCCAAATTGTA 193128 |||||| || ||| Sbjct 117591 AATCCACATGGTA 117603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628529377259520