Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Piromyces_20finnis_20[genbank_20GCA_5F002104945.1_202017-04-20] 232 sequences; 56,455,805 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq193 197 3e-45 seq135 174 3e-38 seq182 141 2e-28 seq57 104 5e-17 seq112 102 2e-16 >seq193 Length=296419 Score = 197 bits (218), Expect = 3e-45 Identities = 169/209 (81%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| |||||||||||||| || ||||| || ||||| ||| | | || |||||| Sbjct 33132 ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33191 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| |||||||| |||| | |||||||||||| || || ||||||||||||||| Sbjct 33192 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 33251 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| || ||||||||||| || ||| || ||| ||||| ||||| || || || Sbjct 33252 ATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTA 33311 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || || ||||| Sbjct 33312 CCAGTTAAAGTCTTTACGAAAATTTGCAT 33340 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| |||||||| || ||||| |||||||| ||| | | || |||||| Sbjct 32904 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGTCCATCTTCT 32963 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| |||||||| |||| | |||||||||||| || || ||||||||||||||| Sbjct 32964 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 33023 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| || || |||||||| || ||| || ||| ||||| ||||| || || || Sbjct 33024 ATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTA 33083 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || || ||||| Sbjct 33084 CCAGTTAAAGTCTTTACGAAAATTTGCAT 33112 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| |||||||| || ||||| || ||||| ||| | | || |||||| Sbjct 33360 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33419 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| |||||||| |||| | |||||||||||| || || ||||||||||||||| Sbjct 33420 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 33479 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| || ||||||||||| || ||| || ||| ||||| ||||| || || || Sbjct 33480 ATCTTTGACTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTA 33539 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || || ||||| Sbjct 33540 CCAGTTAAAGTCTTTACGAAAATTTGCAT 33568 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| |||||||||||||| || ||||| || ||||| ||| | | || |||||| Sbjct 32676 ACTAAGTGAAGAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 32735 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| |||||||| |||| | |||||||||||| || || ||||||||||||||| Sbjct 32736 AATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 32795 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| || || |||||||| || ||| || ||| ||||| ||||| || || || Sbjct 32796 ATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTA 32855 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||| || ||||| Sbjct 32856 CCAGTTAAAGTTTTAACAAAAATTTGCAT 32884 Score = 187 bits (206), Expect = 5e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| |||||||| || ||||| || ||||| ||| | | || |||||| Sbjct 33588 ACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 33647 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || |||||||| |||| | |||||||||||| || || ||||||||||||||| Sbjct 33648 AATTGCTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGA 33707 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||||| || || |||||||| || ||| || ||| ||||| ||||| || || || Sbjct 33708 ATCTTTGACTTGACGTTTTCAATAGTGTCAGAAGATTCAACTTCTAAAGTAATAGTTTTA 33767 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || || |||||||| || || |||||| || Sbjct 33768 CCAGTTAAAGTCTTTACGAAAATTTGCATTTTT 33800 >seq135 Length=816381 Score = 174 bits (192), Expect = 3e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| ||||| | || ||||| ||||| || || || || |||||||| ||| | | Sbjct 3789 AAACGAAGAACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGT 3730 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||||| ||| || ||||| ||||||| | |||||||||||| || || |||||| Sbjct 3729 CCATCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCC 3670 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||||||||| || || ||||||||||| |||||| | ||| ||||| || || Sbjct 3669 TTATCTTGAATCTTAGCCTTGACATTTTCAATAGTATCAGATGATTCAACTTCTAAGGTA 3610 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 || ||||| ||||| | || || ||||| |||| Sbjct 3609 ATGGTCTTACCTGTAAGAGTTTTAACAAAAATCT 3576 >seq182 Length=390966 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| ||||| | ||| || |||||||| || || || || || ||||| || | | | Sbjct 118191 AAACGAAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGA 118250 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||||| ||| || || || ||||| || | |||||| ||||| || || |||||| Sbjct 118251 CCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGAATACCTTCC 118310 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| ||||| ||||||||||| || || | ||| || || | || Sbjct 118311 TTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTA 118370 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || | || || || || || ||||| Sbjct 118371 ATGGTCTTACCCGTAAGGGTTTTGACGAAGATTTGCAT 118408 >seq57 Length=911805 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| ||| || ||||| ||||||| | |||||||||||| || || |||||||| Sbjct 75487 GTCTTCTAATTGCTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTT 75546 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| |||||||| |||| | || || ||| || || | || || Sbjct 75547 TTCTTGGATCTTGTTCTTTACATTAACAATGCTGTCGGAAGATTCAACCTCAAGGGTGAT 75606 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 ||||| || || | ||||||||||| |||| Sbjct 75607 AGTCTTTCCGGTAAGGGTCTTTACAAAAATCT 75638 >seq112 Length=1961624 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || ||||| ||| |||| |||||||| |||||| || || |||||| Sbjct 1853791 TTTTGAATGTTGTAGTCAGAAAGAGTTCTGTTGTCTTCTAATTGTTTACCGGCGAAGATT 1853732 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | |||||| ||||| || || |||||||| ||||||||||| || ||||| || Sbjct 1853731 AAACGTTGTTGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACA 1853672 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || | || || || || || | ||||| ||||| || || | || || || || Sbjct 1853671 ATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAA 1853612 Query 82803 ATCTGCATTATTATATT 82819 |||| ||| ||||||| Sbjct 1853611 ATCT--ATT-TTATATT 1853598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824281518648